PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG016426t1
Common NameTCM_016426
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family WRKY
Protein Properties Length: 360aa    MW: 40092.5 Da    PI: 5.8009
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG016426t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.19.9e-30129189259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                       dDgy+WrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs+edp ++eitY+g+H++ 
  Thecc1EG016426t1 129 DDGYSWRKYGQKDILGAKYPRSYYRCTYRntqNCWATKQVQRSDEDPAIFEITYRGTHTCA 189
                       8***************************98899*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.7E-29123189IPR003657WRKY domain
SuperFamilySSF1182902.09E-26126189IPR003657WRKY domain
SMARTSM007741.5E-41128190IPR003657WRKY domain
PROSITE profilePS5081121.93129186IPR003657WRKY domain
PfamPF031063.0E-27129188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MEHGWHWEQE TLIGELIQGM ELAKQLRVHL GTASSVESRD LLVQKILSSY EKALLILKMN  60
RPVGQPQQNV GATSGVPESP LSTNGSPRSD DLEKDNQDIR DVSKKRKMLP RWTDQVRVSS  120
ESLLEGPHDD GYSWRKYGQK DILGAKYPRS YYRCTYRNTQ NCWATKQVQR SDEDPAIFEI  180
TYRGTHTCAL GNQAAVPPPA SPEKQEHKSN NLNYNNNQQW QSQDILLNFR KGLRVNTEGL  240
DNKGVAPSFS FPPSSFGCLT SENHTSSPSG VLDNNNILGS FSSPFMSPAT PELNYFSVSH  300
SQMNNLGGIL DARHAESVLT ELISANTSAT NSPIMDLDFS LDHVELDPNF PFDTPGFFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-20129188968OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007040478.20.0PREDICTED: probable WRKY transcription factor 41
TrEMBLA0A061GD530.0A0A061GD53_THECC; WRKY family transcription factor, putative isoform 1
STRINGEOY249790.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19332783
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.16e-70WRKY family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]