PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG016563t2
Common NameTCM_016563
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family HSF
Protein Properties Length: 529aa    MW: 57805.1 Da    PI: 4.6877
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG016563t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.95.3e-36451362102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y++++d++++ ++sws ++nsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll
  Thecc1EG016563t2  45 FLSKTYDMVDDPATDAIVSWSPTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLL 128
                       9********************999*****************************************999.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i r+k 
  Thecc1EG016563t2 129 RNISRRKP 136
                       *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.9E-4037128IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.77E-3640134IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.3E-6541134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-204568IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.7E-3245134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-208395IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434084108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-2096108IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MDGMSSSSNG QNDASTTGGG AQTAAQPQPT PQPVAVQSAN APPPFLSKTY DMVDDPATDA  60
IVSWSPTNNS FVVWNPPEFA RDLLPKYFKH NNFSSFVRQL NTYGFRKVDP DRWEFANEGF  120
LRGQKHLLRN ISRRKPAHGH GHQQTQQSHG QSSSVGACVE VGKFGLEEEV ERLKRDKNVL  180
MQELVRLRQQ QQATDNQLQT VVQRLQGMEQ RQQQMMSFLA KAVQSPGFLA QFVQQQNESN  240
RRITEANKKR RLKQDGIIDN EHSASSDGQI VKYQPMMNEA KALLRQFMKG DASPRMDSFN  300
NNNENFLIGD GLSSSSGIDG GNSSIRVSGV TLQEVPPTSG QSTYIPATSE ISGHCPSTAI  360
TEVQSSPSET TSEKITTAQF PDVSALAGVQ KPPSISVSQT DIIMPELSQI PDMVPESIVD  420
IPTENYMGSE TGNGGFIDPA TFVVDGSVPI ELDDIAPDPD IDALLDNSTF WADLLVHSPL  480
PDDIESPSMD GKSKGNEGQP IDNGWDKSQH MDKLTEQMGL LRSDNKGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-294313418120Heat shock factor protein 1
5d5u_B7e-294313427129Heat shock factor protein 1
5d5v_B7e-294313427129Heat shock factor protein 1
5d5v_D7e-294313427129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246253NKKRRLKQ
2247252KKRRLK
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007040660.20.0PREDICTED: heat stress transcription factor A-1d
RefseqXP_017972804.10.0PREDICTED: heat stress transcription factor A-1d
SwissprotQ401520.0HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLA0A061G5S90.0A0A061G5S9_THECC; Heat shock transcription factor A1D isoform 1
STRINGEOY251600.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-129heat shock transcription factor A1D
Publications ? help Back to Top
  1. Zhu B, et al.
    Identification and characterization of a novel heat shock transcription factor gene, GmHsfA1, in soybeans (Glycine max).
    J. Plant Res., 2006. 119(3): p. 247-56
    [PMID:16570125]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Cai SY, et al.
    HsfA1a upregulates melatonin biosynthesis to confer cadmium tolerance in tomato plants.
    J. Pineal Res., 2017.
    [PMID:28095626]
  4. Zhou J, et al.
    Heat Shock Factor HsfA1a Is Essential for R Gene-Mediated Nematode Resistance and Triggers H2O2 Production1.
    Plant Physiol., 2018. 176(3): p. 2456-2471
    [PMID:29339397]