PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG016638t1

Common Name

TCM_016638

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

BBR-BPC

Protein Properties

Length: 237aa MW: 25540.3 Da PI: 10.6293

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG016638t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	253.9	9.5e-78	38	236	103	301
GAGA_bind 103 sgtksidslqqlsepqledsave..lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekks 193 +g +s++ +q ++ep l ++ ++ +e +++ + ++ + + +++ + k++++ k+ + k++kkk++++kk + + +++k+ekk+ Thecc1EG016638t1 38 PGLSSLQGTQIHHEPGLVVAPIRsiAPTTESGKNNDLGSKSTRVGKQNPSVKGSNQIASKVLRPKQPKKKPSVPKKAKGTVI--PEAKREKKN 128 45566666677667666555555435566666777777777777777777779999999999*****9999866555544..79*** PP GAGA_bind 194 idlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLk 286 +++ l+g ++D s++P P+CsCtG+ r+CYkWG+GGWqS+CCt++iS yPLP+s++r+gaR+agrKmS+ga+ klL +LaaeG+dls+pvDLk Thecc1EG016638t1 129 LNIDLDGTNFDFSGVPSPICSCTGVARVCYKWGAGGWQSSCCTINISEYPLPMSSTRPGARMAGRKMSNGAYLKLLLRLAAEGHDLSHPVDLK 221 ***************************************************************************************** PP GAGA_bind 287 dhWAkHGtnkfvtir 301 +hWA+HGtnkfvti+ Thecc1EG016638t1 222 EHWARHGTNKFVTIK 236 ************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	7.7E-83	16	236	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	1.5E-70	71	236	IPR010409	GAGA-binding transcriptional activator

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MKMGSYSNKN MMPETNTGSS VSPFSLFYTG NYIPTSRPGL SSLQGTQIHH EPGLVVAPIR 60 SIAPTTESGK NNDLGSKSTR VGKQNPSVKG SNQIASKVLR PKQPKKKPSV PKKAKGTVIP 120 EAKREKKNLN IDLDGTNFDF SGVPSPICSC TGVARVCYKW GAGGWQSSCC TINISEYPLP 180 MSSTRPGARM AGRKMSNGAY LKLLLRLAAE GHDLSHPVDL KEHWARHGTN KFVTIK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007040772.1	1e-176	PREDICTED: protein BASIC PENTACYSTEINE7
Swissprot	O82286	9e-77	BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBL	A0A061G7A0	1e-174	A0A061G7A0_THECC; Basic pentacysteine 7, putative
STRING	EOY25273	1e-175	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13674	21	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35550.4	3e-73	basic pentacysteine 7

Link Out ? help Back to Top
Phytozome	Thecc1EG016638t1
Entrez Gene	18606858

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]