PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG016914t1
Common NameTCM_016914
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family B3
Protein Properties Length: 146aa    MW: 16628.5 Da    PI: 10.58
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG016914t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.95.1e-1527119296
                       EEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrs 88 
                        k  ++ dvlk  rl +p ++++      gg      +l+++de+g  W++ +++rk++     vl++GW+eFv a+ L +gD v+F+ ++++
  Thecc1EG016914t1  27 SKRVSRTDVLK--RLAIPTECLAFLprfcGGH---ALELSVRDENGHCWTFVCSIRKTGAYqkPVLQQGWREFVLAKCLHVGDRVTFYEQESE 114
                       56666666666..4889998886668887555...347***************9855554445*************************43335 PP

                       EE..EEEE CS
                B3  89 efelvvkv 96 
                       ++   +k+
  Thecc1EG016914t1 115 DG---IKI 119
                       54...555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-1816115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.39E-1324111IPR015300DNA-binding pseudobarrel domain
CDDcd100172.78E-1725109No hitNo description
SMARTSM010193.7E-726123IPR003340B3 DNA binding domain
PfamPF023626.9E-1230116IPR003340B3 DNA binding domain
PROSITE profilePS508638.88259123IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MASKGKKAFH ESKAKQKQAK KRRVLFSKRV SRTDVLKRLA IPTECLAFLP RFCGGHALEL  60
SVRDENGHCW TFVCSIRKTG AYQKPVLQQG WREFVLAKCL HVGDRVTFYE QESEDGIKIF  120
GSILPRSRYG IEIEKTMRPL TARPC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021299323.13e-90B3 domain-containing transcription factor NGA4-like
TrEMBLA0A061ECQ61e-103A0A061ECQ6_THECC; Uncharacterized protein
STRINGEOY024431e-104(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16093413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.13e-09B3 family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]