PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG016923t1
Common NameTCM_016923
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family B3
Protein Properties Length: 136aa    MW: 15025.5 Da    PI: 9.8122
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG016923t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.61.3e-1435992294
                      H.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                B3 22 faeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                      f+   g++    ++l ++d +g sW++ ++ rk++ +  vl+kGW++F+ a+gL +gD v+F+ ++++++   +
  Thecc1EG016923t1 35 FC---GSN---AIELLVRDDNGCSWTFVCSLRKTGYAkPVLQKGWRHFALAKGLTVGDKVTFYQQETDDG---I 99
                      33...333...468***************998887777*************************5554555...3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.00312105IPR003340B3 DNA binding domain
CDDcd100173.74E-132296No hitNo description
SuperFamilySSF1019361.31E-113196IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-113498IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.1E-1337113IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.13642108IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MTKGQHKDLE KTKIPIWPGL SLAIPTKSLA FLPHFCGSNA IELLVRDDNG CSWTFVCSLR  60
KTGYAKPVLQ KGWRHFALAK GLTVGDKVTF YQQETDDGIK VFGTVFPRSC YSIEVERAIK  120
PSLSRAGVDH NLAMK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021299324.16e-75B3 domain-containing transcription factor NGA4-like
TrEMBLA0A061EBZ41e-96A0A061EBZ4_THECC; Uncharacterized protein
STRINGEOY024512e-97(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16093413
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]