PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG016952t1

Common Name

TCM_016952

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

LBD

Protein Properties

Length: 173aa MW: 18836.1 Da PI: 7.3364

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG016952t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	145.2	1.8e-45	10	108	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrrkC +dC++apyfp e+p+kfanvhk+FGasnv+kll+++p+++reda++sl+yeAear++dPvyG+vg i+ lq+q+++l+ e Thecc1EG016952t1 10 PCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVPPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVMRLQRE 102 7******************************************************************************************** PP DUF260 94 lallke 99 l+++++ Thecc1EG016952t1 103 LDATNA 108 *99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	28.041	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.3E-45	10	107	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MASSSYSNSP CAACKFLRRK CMPDCIFAPY FPPEEPQKFA NVHKIFGASN VSKLLNEVPP 60 HQREDAVNSL AYEAEARMKD PVYGCVGAIS VLQRQVMRLQ RELDATNADL IRFACNEMPP 120 ASISQYGRRT GHHGGAAGAA SFNQNSGYYY PSQWNSDDPC GDNERSSGGG SM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-68	7	118	8	119	LOB family transfactor Ramosa2.1
5ly0_B	4e-68	7	118	8	119	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007031563.2	1e-126	PREDICTED: LOB domain-containing protein 25
Refseq	XP_017974239.1	1e-126	PREDICTED: LOB domain-containing protein 25
Refseq	XP_017974240.1	1e-126	PREDICTED: LOB domain-containing protein 25
Swissprot	Q8L8Q3	3e-69	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	A0A061EJK7	1e-126	A0A061EJK7_THECC; Lateral organ boundaries domain family protein
STRING	EOY02489	1e-127	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	3e-71	LOB domain-containing protein 25

Link Out ? help Back to Top
Phytozome	Thecc1EG016952t1
Entrez Gene	18600822

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]