PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG017068t2
Common NameTCM_017068
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C3H
Protein Properties Length: 378aa    MW: 42341.6 Da    PI: 4.9622
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG017068t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.96.1e-1291113426
                       ---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                       e C+f+++tG+Ck+G +CkF+H+
  Thecc1EG017068t2  91 EDCSFYLKTGHCKFGLNCKFNHP 113
                       89********************9 PP
2zf-CCCH26.11.5e-08136158527
                       --SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                       +C+++++tG C+yGd C++ H++
  Thecc1EG017068t2 136 ECKYYRATGGCRYGDACRYRHSK 158
                       7******************9985 PP
3zf-CCCH29.99.9e-10196218527
                       --SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                       +C++++ +G CkyG+ C+++H++
  Thecc1EG017068t2 196 ECKYYLTSGGCKYGNACRYSHSK 218
                       7********************95 PP
4zf-CCCH38.12.7e-12246268426
                       ---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                       ++C++++rtG C yG++C+F+H+
  Thecc1EG017068t2 246 KECPYYMRTGSCAYGPNCRFNHP 268
                       68********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.18387115IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-587114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-591114IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-991113IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-493112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.849131159IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-5131158IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6135161IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-6136158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-7137161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821191219IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-4191218IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-6196222IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-7196218IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5197219IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.943242270IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-6244269IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6245270IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-10246268IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-5248267IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MGSCEEYYSS LPETPNQTQT ESALGFNSST LLSNLYPGTE KEEESLVEGL KNVTFEESDR  60
KSYAGDDNSE NLQVDWQNGE NYQYPLRPYA EDCSFYLKTG HCKFGLNCKF NHPDGGGSQD  120
KENHKGWTAE QTGQIECKYY RATGGCRYGD ACRYRHSKED YVLAPLEVNS FGLPVQVGIN  180
EKREQDGSVE QTGQIECKYY LTSGGCKYGN ACRYSHSKEK SRYLEKSEIP PPELNFLGLP  240
IRMLEKECPY YMRTGSCAYG PNCRFNHPDP TTAEGSNIFS SDSSGFGGHS SGNYNRESSL  300
LPLSSKPTAA SLSLNMMPDK HVPYLNQSSS YAHGMHLNSE WNGHQEVWMM VFLFNPNLSL  360
SCDDFSHLGC LVSEYVF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007031725.20.0PREDICTED: zinc finger CCCH domain-containing protein 67
TrEMBLA0A061EE490.0A0A061EE49_THECC; Zinc finger C-x8-C-x5-C-x3-H type family protein isoform 2
STRINGEOY026510.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.15e-37C3H family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]