PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG017198t2

Common Name

TCM_017198

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Protein Properties

Length: 88aa MW: 9796.54 Da PI: 10.7842

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG017198t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58.1	1.6e-18	8	82	16	96
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 l lp fa++++ + +++ + grsW vkl + +++r +lt+GW+ F+k+n L+++D++vF+l+++s++ l+v + Thecc1EG017198t2 8 LLLPFGFAKRYMPG----TRMVILQVAGRSWHVKL--KSYPSRSFLTSGWSLFAKENALQANDICVFELINSSNAVLRVYI 82 789999999622....35899999*****..*******************************99999788776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	13.606	1	86	IPR003340	B3 DNA binding domain
SMART	SM01019	4.6E-14	4	86	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.73E-18	7	85	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	2.1E-16	8	82	IPR003340	B3 DNA binding domain
CDD	cd10017	2.30E-18	8	84	No hit	No description
Gene3D	G3DSA:2.40.330.10	1.5E-18	8	83	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 88 aa Download sequence Send to blast
KNPNFKVLLL PFGFAKRYMP GTRMVILQVA GRSWHVKLKS YPSRSFLTSG WSLFAKENAL 60 QANDICVFEL INSSNAVLRV YISKCAG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017974375.1	6e-57	PREDICTED: B3 domain-containing transcription factor VRN1 isoform X2
TrEMBL	A0A061ED07	1e-57	A0A061ED07_THECC; Uncharacterized protein isoform 2 (Fragment)
STRING	EOY02806	2e-58	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14804	4	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	3e-12	B3 family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG017198t2
Entrez Gene	18601014

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]