PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG017228t1

Common Name

TCM_017228

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

C2H2

Protein Properties

Length: 256aa MW: 28998.8 Da PI: 9.3717

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG017228t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00017	95	117	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+++++++++L H + H Thecc1EG017228t1 95 SCSVCSRVYPTSHLLSIHVSEaH 117 6*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	2.1	67	92	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	69	92	IPR007087	Zinc finger, C2H2
SMART	SM00355	5.6	94	117	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	96	117	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.057	132	157	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	134	157	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MAMVVDYQHD LSFPYWTSTR RRFDPDSPFF SSGNIERELL AKQVALDLTE DERNQLEKMV 60 AKDARGVFCP IVGCGARLIS LEDFEDHYNA RHTASCSVCS RVYPTSHLLS IHVSEAHDSF 120 FQAKVARGYA VYECLVEGCG LKFKSYKGRQ QHLVDKHKFP TSFEFFKKAL PSKKQRQKNH 180 RKQAMHKKDE EASSKMEVEN ETMDGLVSAV SKLSTSDSSP STVSFGRHHT RGLTFVPRSV 240 QQEKRADSRL AGAKR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	172	178	KKQRQKN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007031899.2	0.0	PREDICTED: zinc finger protein 511
TrEMBL	A0A061ECW8	0.0	A0A061ECW8_THECC; Zinc ion binding,nucleic acid binding,zinc ion binding
STRING	EOY02825	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9971	26	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14140.1	1e-117	zinc ion binding;nucleic acid binding;zinc ion binding

Link Out ? help Back to Top
Phytozome	Thecc1EG017228t1
Entrez Gene	18601032

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]