PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG017242t1
Common NameTCM_017242
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MIKC_MADS
Protein Properties Length: 210aa    MW: 24320.8 Da    PI: 8.7108
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG017242t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF849.4e-27959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krie+ks rqvtfskR++g++KKA ELSvLCd+e  ++ifs++gkly +ss
  Thecc1EG017242t1  9 KRIEDKSSRQVTFSKRKTGLIKKARELSVLCDVELGLVIFSPRGKLYQFSS 59
                      79***********************************************96 PP
2K-box50.31e-171021723099
             K-box  30 nLq.reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                       +Lq    Rh+ G+++e+L++ +L qLe+qL++ l++ R++K++++++ i  l kke+ l++e+++++++++
  Thecc1EG017242t1 102 SLQaMVERHIEGQNIEQLNMTQLVQLERQLDSILRQTRNRKTQVMMDTIAALNKKEEHLRQEKHDMEMEIA 172
                       5676678*********************************************************9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.459161IPR002100Transcription factor, MADS-box
CDDcd002651.83E-38273No hitNo description
SuperFamilySSF554557.06E-30278IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003196.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.9E-1386170IPR002487Transcription factor, K-box
PROSITE profilePS512979.7487177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MGRGKVQLKR IEDKSSRQVT FSKRKTGLIK KARELSVLCD VELGLVIFSP RGKLYQFSSG  60
ESLRTILDRY LNHVDEEAAV CNRVNEAKQI HDEFIDLWRG TSLQAMVERH IEGQNIEQLN  120
MTQLVQLERQ LDSILRQTRN RKTQVMMDTI AALNKKEEHL RQEKHDMEME IAARTMGVED  180
RERAEKLNQD PHSNGYDQPP LQKGLLHLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-19167167MEF2C
5f28_B2e-19167167MEF2C
5f28_C2e-19167167MEF2C
5f28_D2e-19167167MEF2C
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007031911.21e-153PREDICTED: truncated transcription factor CAULIFLOWER A isoform X1
TrEMBLA0A061EEK21e-153A0A061EEK2_THECC; MADS-domain protein, putative
STRINGEOY028371e-154(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM9861987
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.35e-42MIKC_MADS family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]