PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG017284t1
Common NameTCM_017284
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NAC
Protein Properties Length: 240aa    MW: 26897.4 Da    PI: 9.6199
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG017284t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM114.89.1e-36151381128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       +p G+rFhPtdeelvv+yLk+k+ + +l++ +vi+e+d+++++Pw+Lp     ++++ yfFs++  + + +k+ +ra+ sgyW++ gk+k++l
  Thecc1EG017284t1  15 MPIGYRFHPTDEELVVHYLKRKALSLPLPA-SVIPEFDVFQTDPWSLPG---DSKENRYFFSNSYGNDS-NKNCKRAAGSGYWQQIGKEKPIL 102
                       699***************************.99***************3...355678***99988765.57889999*************** PP

               NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++ ++++vg++k L++ + ++++ +k +W++h+yrl
  Thecc1EG017284t1 103 ASgSNQVVGMRKALIYCERKRSSDTKIRWLLHQYRL 138
                       9966778***********999999**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-4111167IPR003441NAC domain
PROSITE profilePS5100540.55415167IPR003441NAC domain
PfamPF023651.0E-2016138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MESSQNFVVN GGIKMPIGYR FHPTDEELVV HYLKRKALSL PLPASVIPEF DVFQTDPWSL  60
PGDSKENRYF FSNSYGNDSN KNCKRAAGSG YWQQIGKEKP ILASGSNQVV GMRKALIYCE  120
RKRSSDTKIR WLLHQYRLVG SAATLGSSQM SKWKLFGDWL VFRVFQRKRK AKKHRASSNK  180
SQITSAVTMP SCIDFTVEDC SVYGPPQPSS PSSSEITEVS LNGLDEEESS DFIGSYSNR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-311317315171NO APICAL MERISTEM PROTEIN
1ut4_B4e-311317315171NO APICAL MERISTEM PROTEIN
1ut7_A4e-311317315171NO APICAL MERISTEM PROTEIN
1ut7_B4e-311317315171NO APICAL MERISTEM PROTEIN
4dul_A4e-311317315171NAC domain-containing protein 19
4dul_B4e-311317315171NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165172QRKRKAKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007031956.21e-179PREDICTED: NAC domain-containing protein 83
TrEMBLA0A061EEQ11e-178A0A061EEQ1_THECC; NAC domain containing protein 83, putative
STRINGEOY028821e-179(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78742541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.18e-47NAC domain containing protein 83
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]