PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG017297t1

Common Name

TCM_017297

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

CO-like

Protein Properties

Length: 458aa MW: 51305.9 Da PI: 6.8138

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG017297t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22.9	1.8e-07	17	55	5	37
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+ +++k++ l+C ++ lC C + H+ H Thecc1EG017297t1 17 LCDFCNSKPAVLYCIADSAKLCLFCDQRVHSAnalsfkH 55 7**************************999655666666 PP
2	zf-B_box	25.6	2.5e-08	58	104	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvpl 42 ++C+ ++ k++++ C +++ +C+dC ++H++ H+++p+ Thecc1EG017297t1 58 SQICDGCKTKPASFLCSNDNLIFCQDCDWNSHNSncsvsalHERSPV 104 689*****************************889999999998875 PP
3	CCT	60.4	6.1e-21	407	451	1	45
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 R +a+lRY+eK+k+R+++K+irYesRKa+A++R+R KGrFvk++e Thecc1EG017297t1 407 RGNAMLRYQEKKKHRRYDKHIRYESRKARADTRKRFKGRFVKASE 451 7789**************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	9.343	13	60	IPR000315	B-box-type zinc finger
SMART	SM00336	4.7E-9	13	60	IPR000315	B-box-type zinc finger
CDD	cd00021	3.41E-7	16	48	No hit	No description
Pfam	PF00643	1.1E-5	17	57	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.025	56	104	IPR000315	B-box-type zinc finger
Pfam	PF00643	2.3E-5	58	103	IPR000315	B-box-type zinc finger
CDD	cd00021	7.77E-5	60	104	No hit	No description
SMART	SM00336	3.9	61	104	IPR000315	B-box-type zinc finger
Pfam	PF06203	5.9E-15	407	449	IPR010402	CCT domain
PROSITE profile	PS51017	14.197	407	449	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence Send to blast
MMEKVSKSKP RRSVLVLCDF CNSKPAVLYC IADSAKLCLF CDQRVHSANA LSFKHARSQI 60 CDGCKTKPAS FLCSNDNLIF CQDCDWNSHN SNCSVSALHE RSPVERFSGC PSVTELASLL 120 GFDLKPKYLM NLDPGFSLYE QELMNLEDFM VPNENSSVSS ALLSSVKLNH EVYRQLVEMG 180 KRDLVRVSGD GAELGPGTPP GRSSEKGNLG SFEVENGDDE ELLHQRTSFS SLLMLQNNVA 240 LRKTDYVAEG ELIWDYNSSY QASKIWDFQS GRSRDYEESC PEDAGCMNSI SSRGFVIKNY 300 DEFAKEGSLS ETKVFQDMDQ MSLSMKCEDT LSRSSRCNQP FSSYTATTEA SNHVPVVGSS 360 SDSKVVEPLK CDSTRYVQVM EHLVLAGGES MNEAKAKIDM ELLAQSRGNA MLRYQEKKKH 420 RRYDKHIRYE SRKARADTRK RFKGRFVKAS EAPDVKV*

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence Send to blast

MMEKVSKSKP RRSVLVLCDF CNSKPAVLYC IADSAKLCLF CDQRVHSANA LSFKHARSQI  60
CDGCKTKPAS FLCSNDNLIF CQDCDWNSHN SNCSVSALHE RSPVERFSGC PSVTELASLL  120
GFDLKPKYLM NLDPGFSLYE QELMNLEDFM VPNENSSVSS ALLSSVKLNH EVYRQLVEMG  180
KRDLVRVSGD GAELGPGTPP GRSSEKGNLG SFEVENGDDE ELLHQRTSFS SLLMLQNNVA  240
LRKTDYVAEG ELIWDYNSSY QASKIWDFQS GRSRDYEESC PEDAGCMNSI SSRGFVIKNY  300
DEFAKEGSLS ETKVFQDMDQ MSLSMKCEDT LSRSSRCNQP FSSYTATTEA SNHVPVVGSS  360
SDSKVVEPLK CDSTRYVQVM EHLVLAGGES MNEAKAKIDM ELLAQSRGNA MLRYQEKKKH  420
RRYDKHIRYE SRKARADTRK RFKGRFVKAS EAPDVKV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007031974.2	0.0	PREDICTED: zinc finger protein CONSTANS-LIKE 9
TrEMBL	A0A061ED36	0.0	A0A061ED36_THECC; B-box type zinc finger protein with CCT domain, putative
STRING	EOY02900	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19226	7	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33500.1	1e-75	B-box type zinc finger protein with CCT domain

Link Out ? help Back to Top
Phytozome	Thecc1EG017297t1
Entrez Gene	18601091

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]