PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG017352t1
Common NameTCM_017352
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 271aa    MW: 29459.5 Da    PI: 8.2441
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG017352t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.8e-2053102255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa+a++aa++k++g
  Thecc1EG017352t1  53 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEAAAAAYDAAALKFKG 102
                       7********.**********94....45************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-3252111IPR001471AP2/ERF domain
SMARTSM003801.3E-3753116IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-2253111IPR016177DNA-binding domain
PROSITE profilePS5103225.26453110IPR001471AP2/ERF domain
CDDcd000181.04E-2253111No hitNo description
PfamPF008471.2E-1353102IPR001471AP2/ERF domain
PRINTSPR003671.5E-115465IPR001471AP2/ERF domain
PRINTSPR003671.5E-117692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MAAASAFAHH HRLNTQSDIL PHQQATDQVS VLTEQDRSSL PAKDQGNVIR KRHYRGVRQR  60
PWGKWAAEIR DPKKAARVWL GTFDTAEAAA AAYDAAALKF KGSKAKLNFP ERVQGGGLHQ  120
FCFSACSNNN PIPVPNEQVP SSVSSSTPQL PPSLPNIAPS SLPHEAFPYL SQYMQLLSSD  180
FTDNYWQYVE SAGLHIQQPA LFSQSSSSVT SSTTYSGMAQ NQVGEDNELP RFSSPAQMGS  240
FSSSSSSSSP SSHLFLNQGN DYSEGRKPKE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-2650116269ATERF1
3gcc_A7e-2650116269ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017975142.11e-156PREDICTED: ethylene-responsive transcription factor ERF113 isoform X2
TrEMBLA0A061EEX20.0A0A061EEX2_THECC; AP2/ERF domain-containing transcription factor-like protein isoform 1
STRINGEOY029581e-155(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.11e-32ERF family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]