PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG018486t1

Common Name

TCM_018486

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 85aa MW: 9416.71 Da PI: 10.5508

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG018486t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.2	7.8e-05	9	49	12	54
HHHHHHHHH.HHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsaf.eeLrellPkaskapskKlsKaeiLekAveYIksL 54 R ++ N+ f +L ell ++ ++kK + + L k++ +Ik L Thecc1EG018486t1 9 RANENNEDFsLKLGELLSTN---KKKKRNASKLLDKTCSHIKRL 49 67777888877999****...*****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.43E-5	20	68	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-4	20	65	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 85 aa Download sequence Send to blast
MSSKRSSARA NENNEDFSLK LGELLSTNKK KKRNASKLLD KTCSHIKRLN GEVDDLSNRI 60 SELMASPDTN KSIKANILTQ LLQQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007032502.1	5e-53	PREDICTED: transcription factor ILI4
TrEMBL	A0A061EFJ5	1e-51	A0A061EFJ5_THECC; Uncharacterized protein
STRING	EOY03428	2e-52	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26945.1	2e-11	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG018486t1
Entrez Gene	18601488

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]