PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG018711t1

Common Name

TCM_018711

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

FAR1

Protein Properties

Length: 792aa MW: 90222.5 Da PI: 6.1383

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG018711t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	97.4	1.6e-30	77	172	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 +fYn+YAk++GFs+r+++ ++sk++++i++r+f+Cskeg+r+e++++ ++k+rr+r+ tr gCka ++v+++++gkw+v+kle+ H+H Thecc1EG018711t1 77 NFYNAYAKQTGFSIRVNSYYRSKKDNSIISREFCCSKEGFRREKRSRnvdsgdDTKKRRSRPITREGCKALMTVRRRDNGKWYVAKLEKSHSH 169 6***************************************999889999************************************ PP FAR1 88 ela 90 el+ Thecc1EG018711t1 170 ELV 172 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-27	77	172	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.7E-33	293	386	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.362	575	611	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.0E-10	586	613	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	3.4E-9	586	610	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 792 aa Download sequence Send to blast
MEEEPSSEGK EIVDSYVALE DKGDGCCMVE DDANPIVLDD PGKEDEHLNL EFSQYLVGGA 60 LEPTLGMEFT SEDDARNFYN AYAKQTGFSI RVNSYYRSKK DNSIISREFC CSKEGFRREK 120 RSRNVDSGDD TKKRRSRPIT REGCKALMTV RRRDNGKWYV AKLEKSHSHE LVTPAMRHFL 180 RSHKEEYDPK KSLSGSISSS GVCLNASVNV LTEECNSFGK LGFAAHNNIN FIGKGRLSNF 240 GVDAQSLLGF FKVMQARDPA FYYAIQVDEE DRLSSVFWVD TRSRIAYNCF SDVVSFDTTY 300 QVNQYKMPFA PFIGVNHHRQ SVLFGCALLA DETESTFIWL FTTWLEAMSR QQPGLLITDY 360 DSAISRAVES VFPQSSHRYC KWHILSKMPK EMGHVYSALP KTFQVEFDKC VNKSETPEEF 420 ESAWHLLLDK YNLRGNEWLQ SLYIDRKLWV STYVRDTFFA AMYTTQRSKS VNSLFDGYVN 480 AGTTLQDFAE QYEKALDDRY EKEARAEFET FYTKPVLKTP LPMEKQATEV YTRKLFSVFQ 540 DEIYESLVLA VNLSQDEGLS RTYEVARFDE EHKVYFVGLN IADQIASCSC KMFEFEGILC 600 RHVIAVFKAT NIFLLPQHYI LRRWTRNAKD EAMLDAMPSV EMNGNSQKGK NSQYNLLYQE 660 AVKCAEEGMA SDHSFKVSLN ALREARIKIT TAKKNAINAQ KLETAASTNF LDENTTVGSQ 720 VDSSSVVTLH DHQQAKMRDS CAENDISKYA SEQSSSRVSI CTNCKCPGHE SLSCLWLKDG 780 RGSTSLENKI Q*

Sequence ? help Back to Top

Protein Sequence Length: 792 aa Download sequence Send to blast

MEEEPSSEGK EIVDSYVALE DKGDGCCMVE DDANPIVLDD PGKEDEHLNL EFSQYLVGGA  60
LEPTLGMEFT SEDDARNFYN AYAKQTGFSI RVNSYYRSKK DNSIISREFC CSKEGFRREK  120
RSRNVDSGDD TKKRRSRPIT REGCKALMTV RRRDNGKWYV AKLEKSHSHE LVTPAMRHFL  180
RSHKEEYDPK KSLSGSISSS GVCLNASVNV LTEECNSFGK LGFAAHNNIN FIGKGRLSNF  240
GVDAQSLLGF FKVMQARDPA FYYAIQVDEE DRLSSVFWVD TRSRIAYNCF SDVVSFDTTY  300
QVNQYKMPFA PFIGVNHHRQ SVLFGCALLA DETESTFIWL FTTWLEAMSR QQPGLLITDY  360
DSAISRAVES VFPQSSHRYC KWHILSKMPK EMGHVYSALP KTFQVEFDKC VNKSETPEEF  420
ESAWHLLLDK YNLRGNEWLQ SLYIDRKLWV STYVRDTFFA AMYTTQRSKS VNSLFDGYVN  480
AGTTLQDFAE QYEKALDDRY EKEARAEFET FYTKPVLKTP LPMEKQATEV YTRKLFSVFQ  540
DEIYESLVLA VNLSQDEGLS RTYEVARFDE EHKVYFVGLN IADQIASCSC KMFEFEGILC  600
RHVIAVFKAT NIFLLPQHYI LRRWTRNAKD EAMLDAMPSV EMNGNSQKGK NSQYNLLYQE  660
AVKCAEEGMA SDHSFKVSLN ALREARIKIT TAKKNAINAQ KLETAASTNF LDENTTVGSQ  720
VDSSSVVTLH DHQQAKMRDS CAENDISKYA SEQSSSRVSI CTNCKCPGHE SLSCLWLKDG  780
RGSTSLENKI Q*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017975466.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A061EGU0	0.0	A0A061EGU0_THECC; FAR1-related sequence 5
STRING	EOY03612	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Thecc1EG018711t1
Entrez Gene	18601617

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]