PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG018964t1

Common Name

TCM_018964

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

GRAS

Protein Properties

Length: 419aa MW: 46686.9 Da PI: 7.3538

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG018964t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	320.5	3.6e-98	37	417	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 l++lLl+cA++ ssg+l++a+++L ++s las +gd++qRl f+ ALa rl++ +++l kal+ ++ + +e a ++ ++P+l + Thecc1EG018964t1 37 LIQLLLTCAKHASSGNLHRADECLRQISLLASVSGDSIQRLSVRFASALAIRLVKRWPGLHKALNYTQLP---KQEFDDAKPFWGRAFPYLGL 126 689****************************************************************9...555556677899**** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186 s+ + +++ +a+ ge+ +H +D + + W++Ll++L++ p+gpp+l++ +++ +k + ++g rL k Ae+l++ f+fn+l +l Thecc1EG018964t1 127 SYAIITRTLIKATMGERVIHLVDVGSGDVNLWVPLLRSLSCMPDGPPHLKVSCMNA----NKAVVDKLGARLVKEAEALDMAFQFNPL-NVSL 214 ****************************************************....99**********************5.889 PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrll...................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260 ++l+ ++L+v++gEala ++l+lh ll + + + ++L +++slsP+++ vveqeadhn +++++rf+e Thecc1EG018964t1 215 KELTSDMLKVRSGEALAFISILNLHALLaeddrvdahfgdnrningiK----NSRQMCHFLTMMRSLSPNLLLVVEQEADHNLNRLVDRFVEG 303 ************************************9987643332....3335677****************************** PP GRAS 261 leyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352 l+yysa+fd+++a ++++s er+ +E + +g+ei+n+vaceg er+erhe+ ++W +r+ +aGFkpv++ ++ +++a+ +++ +++dgy++ Thecc1EG018964t1 304 LHYYSAVFDAIDAAFGPTSsGERHALEGM-FGKEIENIVACEGVEREERHERHGRWMARFWQAGFKPVRIWYDSMEDANQMVEACGKDGYKIV 395 *******999988887999999999.*********************************************************** PP GRAS 353 eesgslvlgWkdrpLvsvSaWr 374 + ++ l+++W+drpL++vSaW+ Thecc1EG018964t1 396 QGKAGLMICWHDRPLYAVSAWT 417 *******************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	45.659	11	397	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.2E-95	37	417	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MTTSLPSPGP EVSLSLTLPP CPTPLEALKP EERGIRLIQL LLTCAKHASS GNLHRADECL 60 RQISLLASVS GDSIQRLSVR FASALAIRLV KRWPGLHKAL NYTQLPKQEF DDAKPFWGRA 120 FPYLGLSYAI ITRTLIKATM GERVIHLVDV GSGDVNLWVP LLRSLSCMPD GPPHLKVSCM 180 NANKAVVDKL GARLVKEAEA LDMAFQFNPL NVSLKELTSD MLKVRSGEAL AFISILNLHA 240 LLAEDDRVDA HFGDNRNING IKNSRQMCHF LTMMRSLSPN LLLVVEQEAD HNLNRLVDRF 300 VEGLHYYSAV FDAIDAAFGP TSSGERHALE GMFGKEIENI VACEGVEREE RHERHGRWMA 360 RFWQAGFKPV RIWYDSMEDA NQMVEACGKD GYKIVQGKAG LMICWHDRPL YAVSAWTC*

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MTTSLPSPGP EVSLSLTLPP CPTPLEALKP EERGIRLIQL LLTCAKHASS GNLHRADECL  60
RQISLLASVS GDSIQRLSVR FASALAIRLV KRWPGLHKAL NYTQLPKQEF DDAKPFWGRA  120
FPYLGLSYAI ITRTLIKATM GERVIHLVDV GSGDVNLWVP LLRSLSCMPD GPPHLKVSCM  180
NANKAVVDKL GARLVKEAEA LDMAFQFNPL NVSLKELTSD MLKVRSGEAL AFISILNLHA  240
LLAEDDRVDA HFGDNRNING IKNSRQMCHF LTMMRSLSPN LLLVVEQEAD HNLNRLVDRF  300
VEGLHYYSAV FDAIDAAFGP TSSGERHALE GMFGKEIENI VACEGVEREE RHERHGRWMA  360
RFWQAGFKPV RIWYDSMEDA NQMVEACGKD GYKIVQGKAG LMICWHDRPL YAVSAWTC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-43	20	417	2	379	Protein SCARECROW
5b3h_A	2e-43	29	417	10	378	Protein SCARECROW
5b3h_D	2e-43	29	417	10	378	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007032856.2	0.0	PREDICTED: scarecrow-like protein 3
TrEMBL	A0A061EHA3	0.0	A0A061EHA3_THECC; GRAS family transcription factor
STRING	EOY03782	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20661	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	1e-98	scarecrow-like 3

Link Out ? help Back to Top
Phytozome	Thecc1EG018964t1
Entrez Gene	18601746

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]