PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG018971t1
Common NameTCM_018971
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 261aa    MW: 29542.5 Da    PI: 9.4767
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG018971t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding64.32.3e-201663148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd+ll ++v+++G g+W+++ar  g++R++k+c++rw +yl
  Thecc1EG018971t1 16 KGPWTPEEDKLLTEYVNLHGEGRWSSVARSAGLNRSGKSCRLRWVNYL 63
                      79********************************************97 PP
2Myb_DNA-binding51.13e-1669113147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg  T++E+ +++++++++G++ W+tIar+++ gRt++++k++w+++
  Thecc1EG018971t1  69 RGHLTPQEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNYWRTH 113
                       6778******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.9871163IPR017930Myb domain
SuperFamilySSF466895.62E-3213110IPR009057Homeodomain-like
SMARTSM007171.2E-171565IPR001005SANT/Myb domain
PfamPF002493.4E-191663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-241770IPR009057Homeodomain-like
CDDcd001672.64E-131863No hitNo description
PROSITE profilePS5129425.09664118IPR017930Myb domain
SMARTSM007177.9E-1468116IPR001005SANT/Myb domain
PfamPF002493.6E-1469113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-2471117IPR009057Homeodomain-like
CDDcd001673.18E-1073114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MVGMMGWEAP QQGWRKGPWT PEEDKLLTEY VNLHGEGRWS SVARSAGLNR SGKSCRLRWV  60
NYLRPGLKRG HLTPQEEGII IELHALWGNK WSTIARYLPG RTDNEIKNYW RTHFKKKEKS  120
SQKQEKRKAQ TLKLKQQLQQ QQPKPQPDKD EMKRVLPVQT EKANTKVSQV TEAQARPEMV  180
FMYPTLEDQC LPVTSPAAAA SWLDQYLVDE GLWGGLWNLD DPHGGLDQAG NCNKIAMQSQ  240
ATACSFGGDG SNLYNGGYIF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25161177107B-MYB
1h8a_C3e-251611727127MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00388DAPTransfer from AT3G30210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5846885e-38JX584688.1 Gossypium hirsutum clone NBRI_GE18056 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007032859.20.0PREDICTED: myb-related protein 305
TrEMBLA0A061EFJ90.0A0A061EFJ9_THECC; Myb domain protein 121
STRINGEOY037850.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.12e-71myb domain protein 121
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]