PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG018981t1

Common Name

TCM_018981

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

MIKC_MADS

Protein Properties

Length: 249aa MW: 28366.1 Da PI: 8.8834

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG018981t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	92.2	2.5e-29	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +ienk+ rqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs++gkl+e+s+ Thecc1EG018981t1 10 QIENKISRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSNKGKLFEFST 59 69**********************************************96 PP
2	K-box	96.3	4.7e-32	82	174	8	100
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + ++ + +++ e kL + ie Lqr++Rh+lGe+L++Lsl++Lq Leqq+++slk+iR++Kn+l++e+i+elqk+e++lq++n++L kkl+e Thecc1EG018981t1 82 PTGSESQGNWSLECPKLMSTIEALQRNLRHFLGEELDPLSLRDLQLLEQQIDTSLKRIRTRKNQLMHESISELQKRERALQNQNNMLAKKLKE 174 46677889**********************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	31.637	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	5.3E-38	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.44E-32	2	89	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.11E-40	2	79	No hit	No description
PRINTS	PR00404	1.5E-29	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.4E-25	11	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-29	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-29	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	1.5E-27	85	172	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	16.221	88	178	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MGRGRVQLRQ IENKISRQVT FSKRRTGLLK KAHEISVLCD AEVALIVFSN KGKLFEFSTD 60 SSMERILDRY EQQSNAERQL VPTGSESQGN WSLECPKLMS TIEALQRNLR HFLGEELDPL 120 SLRDLQLLEQ QIDTSLKRIR TRKNQLMHES ISELQKRERA LQNQNNMLAK KLKENEKTQT 180 EHAQCEQQNL SQNSSSFIQP PPATIEFPSL TIGGSFQAIE GANKEAETQP QPSTNTVIPP 240 WMLSHVNR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	2e-19	1	74	1	73	Myocyte-specific enhancer factor 2B
1tqe_Q	2e-19	1	74	1	73	Myocyte-specific enhancer factor 2B
1tqe_R	2e-19	1	74	1	73	Myocyte-specific enhancer factor 2B
1tqe_S	2e-19	1	74	1	73	Myocyte-specific enhancer factor 2B
6byy_A	2e-19	1	74	1	73	MEF2 CHIMERA
6byy_B	2e-19	1	74	1	73	MEF2 CHIMERA
6byy_C	2e-19	1	74	1	73	MEF2 CHIMERA
6byy_D	2e-19	1	74	1	73	MEF2 CHIMERA
6bz1_A	2e-19	1	74	1	73	MEF2 CHIMERA
6bz1_B	2e-19	1	74	1	73	MEF2 CHIMERA
6bz1_C	2e-19	1	74	1	73	MEF2 CHIMERA
6bz1_D	2e-19	1	74	1	73	MEF2 CHIMERA
6c9l_A	2e-19	1	74	1	73	Myocyte-specific enhancer factor 2B
6c9l_B	2e-19	1	74	1	73	Myocyte-specific enhancer factor 2B
6c9l_C	2e-19	1	74	1	73	Myocyte-specific enhancer factor 2B
6c9l_D	2e-19	1	74	1	73	Myocyte-specific enhancer factor 2B
6c9l_E	2e-19	1	74	1	73	Myocyte-specific enhancer factor 2B
6c9l_F	2e-19	1	74	1	73	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC155656	4e-82	KC155656.1 Gossypium hirsutum MADS box protein MADS61 mRNA, complete cds.
GenBank	KC155664	4e-82	KC155664.1 UNVERIFIED: Gossypium hirsutum MADS box protein MADS69-like mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017974314.1	0.0	PREDICTED: truncated transcription factor CAULIFLOWER A isoform X2
Swissprot	D7SMN6	1e-108	FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBL	A0A061EHA9	0.0	A0A061EHA9_THECC; Agamous-like MADS-box protein AGL8 isoform 1
STRING	EOY03792	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM792	25	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69120.1	2e-78	MIKC_MADS family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG018981t1
Entrez Gene	18601756

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]