PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG019015t1

Common Name

TCM_019015

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 335aa MW: 37193.8 Da PI: 5.1399

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG019015t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	57.4	2.6e-18	41	90	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+e E+rRR++iN++f++Lr+l+P++ ++K +Ka+ L +++eYI+ Lq Thecc1EG019015t1 41 RSKHSETEQRRRSKINERFQTLRDLIPQN----DQKRDKASFLLEVIEYIQFLQ 90 899***********************9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	2.7E-24	36	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.45E-20	38	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.625	39	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.93E-17	41	94	No hit	No description
Pfam	PF00010	7.8E-16	41	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.2E-14	45	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MVKPVATAQL HQEEEDEDDY EDKGETVKEG KGSEPKANTN RSKHSETEQR RRSKINERFQ 60 TLRDLIPQND QKRDKASFLL EVIEYIQFLQ EKLQMYEGSY QGWSQEPTKL IPWRNHGLPE 120 SFIDNSQVMK NGSSCENNVI IPSILANTQN SIESDLGNAA VFKALDHPPG SATSVVNMQT 180 QPNTFATHGR GSIPTQSFHE SASDSENVVY RPQFQSWQSR ECLTESAVPN NSANGQEDLT 240 IRDDSVGLSS AYSQGILNSL TQALQSSGVD MSQASISVQI DVGKRVASGV TSMASSSKEK 300 EIQYRSNQMM AQTGAHSYTE ESDQAYKRRR TGKS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017975865.1	0.0	PREDICTED: transcription factor BIM2 isoform X1
TrEMBL	A0A061EHD7	0.0	A0A061EHD7_THECC; BES1-interacting Myc-like protein 2, putative isoform 1
STRING	Gorai.001G197500.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	1e-64	BES1-interacting Myc-like protein 2

Link Out ? help Back to Top
Phytozome	Thecc1EG019015t1
Entrez Gene	18601778

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]