PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG019261t1
Common NameTCM_019261
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 225aa    MW: 25567.1 Da    PI: 10.1639
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG019261t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.1e-171360148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+W+++Ed++l+d+++ +G g+W++ ++  g++R++k+c++rw +yl
  Thecc1EG019261t1 13 KGAWSKQEDQKLIDYIRTHGEGCWRSLPKAAGLHRCGKSCRLRWINYL 60
                      79********************************************97 PP
2Myb_DNA-binding51.42.6e-1666110147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++
  Thecc1EG019261t1  66 RGNFAQDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSH 110
                       8999******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-24463IPR009057Homeodomain-like
PROSITE profilePS5129417.395860IPR017930Myb domain
SuperFamilySSF466891.02E-2810107IPR009057Homeodomain-like
SMARTSM007173.0E-141262IPR001005SANT/Myb domain
PfamPF002492.5E-151360IPR001005SANT/Myb domain
CDDcd001678.35E-111560No hitNo description
PROSITE profilePS5129426.33161115IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.1E-2664116IPR009057Homeodomain-like
SMARTSM007173.7E-1565113IPR001005SANT/Myb domain
PfamPF002491.2E-1466110IPR001005SANT/Myb domain
CDDcd001672.14E-1068111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MRKPCCDKQG TNKGAWSKQE DQKLIDYIRT HGEGCWRSLP KAAGLHRCGK SCRLRWINYL  60
RPDIKRGNFA QDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH IKRKLIKLGI  120
DPNNHKLNQY PLRPQPQHVS PSSPASLNVA RKPRRSSAAK DRVSDAASCL EDERSGRVSK  180
LDLDLTIAFP PTPTNHHEEK QQNTASIMTS EEENYTAPTL LLFR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-29131157108B-MYB
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0341341e-149AF034134.1 Gossypium hirsutum MYB-like DNA-binding domain protein (MYB6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007033078.21e-166PREDICTED: transcription repressor MYB6
SwissprotQ388512e-78MYB6_ARATH; Transcription repressor MYB6
TrEMBLA0A061ENU41e-166A0A061ENU4_THECC; Myb domain protein 6
STRINGEOY040041e-167(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.17e-81myb domain protein 6
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]