PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG019356t1

Common Name

TCM_019356

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

NF-YC

Protein Properties

Length: 241aa MW: 27823 Da PI: 5.3713

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG019356t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	142	1.4e-44	81	181	2	98
NF-YC 2 lksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 l+ fw +q i + t fk +h+lPlarik+i+k+d+dvkmisa+aPvl+skacelfileltlr+wl++ee krrtl++sdia a+ + + d Thecc1EG019356t1 81 LELFWYQQmmeIHNITAFKsHHQLPLARIKRIMKSDKDVKMISADAPVLFSKACELFILELTLRAWLETEEGKRRTLQRSDIARAIRQEEALD 173 789**965556778899889******************************************************************* PP NF-YC 91 flvdivpr 98 flvd+vp Thecc1EG019356t1 174 FLVDVVPL 181 ****96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	3.52E-28	82	175	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	2.1E-34	99	167	IPR009072	Histone-fold
Pfam	PF00808	4.5E-21	103	166	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MAAVVGARST IPWGLDMKRP MAERLTMDLN QSMEFTPSST SSPQIHNFLP MTSFMLSFHQ 60 ASKEDGEEVK HSHLLIQKRN LELFWYQQMM EIHNITAFKS HHQLPLARIK RIMKSDKDVK 120 MISADAPVLF SKACELFILE LTLRAWLETE EGKRRTLQRS DIARAIRQEE ALDFLVDVVP 180 LINQKDDDVK FAEENECDPI NQLQFPVLDT NADLVMRSPE VQHLMIKTPM SSDEFNYESA 240 T

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	3e-36	88	180	3	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	153	159	RRTLQRS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007033162.1	1e-167	PREDICTED: nuclear transcription factor Y subunit C-2
TrEMBL	A0A061EGE8	1e-179	A0A061EGE8_THECC; Nuclear factor Y, putative isoform 1 (Fragment)
STRING	EOY04085	1e-180	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18090	7	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	8e-44	nuclear factor Y, subunit C2

Link Out ? help Back to Top
Phytozome	Thecc1EG019356t1
Entrez Gene	18601985

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]