PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG019356t6

Common Name

TCM_019356

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

NF-YC

Protein Properties

Length: 200aa MW: 23131.6 Da PI: 5.5997

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG019356t6	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	142.7	8.9e-45	61	161	2	98
NF-YC 2 lksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 l+ fw +q i + t fk +h+lPlarik+i+k+d+dvkmisa+aPvl+skacelfileltlr+wl++ee krrtl++sdia a+ + + d Thecc1EG019356t6 61 LELFWYQQmmeIHNITAFKsHHQLPLARIKRIMKSDKDVKMISADAPVLFSKACELFILELTLRAWLETEEGKRRTLQRSDIARAIRQEEALD 153 789**965556778899889******************************************************************* PP NF-YC 91 flvdivpr 98 flvd+vp Thecc1EG019356t6 154 FLVDVVPL 161 ****96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.35E-28	64	155	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.4E-34	79	147	IPR009072	Histone-fold
Pfam	PF00808	3.1E-21	83	146	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MAERLTMDLN QSMEFTPSST SSPQIHNFLP MTSFMLSFHQ ASKEDGEEVK HSHLLIQKRN 60 LELFWYQQMM EIHNITAFKS HHQLPLARIK RIMKSDKDVK MISADAPVLF SKACELFILE 120 LTLRAWLETE EGKRRTLQRS DIARAIRQEE ALDFLVDVVP LINQKDDDVK FAEENECDPI 180 NQLQFPVLDT NAVSMRAQI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	8e-37	68	160	3	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	139	RRTLQRS

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007033162.1	1e-141	PREDICTED: nuclear transcription factor Y subunit C-2
Swissprot	Q8LCG7	4e-42	NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBL	A0A061EGF5	1e-145	A0A061EGF5_THECC; Nuclear factor Y, putative isoform 6
STRING	EOY04085	1e-140	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	2e-44	nuclear factor Y, subunit C2

Link Out ? help Back to Top
Phytozome	Thecc1EG019356t6
Entrez Gene	18601985

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li S, et al. HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis. Plant Cell, 2014. 26(4): p. 1764-1780 [PMID:24728648] Mei X, et al. Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm. Mol. Genet. Genomics, 2015. 290(5): p. 1819-31 [PMID:25851237] Baud S, et al. Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed. Plant Physiol., 2016. 171(2): p. 1099-112 [PMID:27208266] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]