PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG019414t1

Common Name

TCM_019414

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

GRAS

Protein Properties

Length: 348aa MW: 39709.9 Da PI: 5.3018

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG019414t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	76.9	3.6e-24	65	235	84	251
GRAS 84 fsevsPilkfsh...ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAee.. 171 ++ P++ f h ++ +aIl + g+ervHiiDf + ++ W Ll+ + p+ p s+R+ ++++p ++ +e +++fA + Thecc1EG019414t1 65 LYPNIPFVYFPHphrSICEKAILSVIMGKERVHIIDFLLPNPDDWEDLLENSSRGPDRPSSIRLSVIAPPL-LKNVYATFFEEAITSFALRvf 156 5556688888774445799******************************9999999*******54.47888899999**8744 PP GRAS 172 .lgvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251 ++v+ ef++++a++l+d++ +eL++++ +E ++V +++++rll++++++e L + +++P+ v+ veqea+hns+ Thecc1EG019414t1 157 wVNVKWEFKLVIANSLADVDASELEFRRteDEIVIVRYAYKMKRLLAQPGTMER----ELFKLGQIKPEFVITVEQEANHNSN 235 469*******************9999*******************9....88899***************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	12.738	1	347	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.2E-21	65	235	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MRSPVLVYLK ACAQAFRDGN LKLADQLMDR IWNPASNELE SLEAESVVKK RKRWAEALVR 60 RAYRLYPNIP FVYFPHPHRS ICEKAILSVI MGKERVHIID FLLPNPDDWE DLLENSSRGP 120 DRPSSIRLSV IAPPLLKNVY ATFFEEAITS FALRVFWVNV KWEFKLVIAN SLADVDASEL 180 EFRRTEDEIV IVRYAYKMKR LLAQPGTMER ELFKLGQIKP EFVITVEQEA NHNSNFVDPL 240 ELLLEEFEDL STINYTSLSM CAVECDGMNG VEMAQLRSLL HAAGFLPFPL NQSEPTGGFV 300 QKENGCLVVS VERWPPVIIS AWKFTDSVHH SISMQAMFYI EPGCCCC*

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MRSPVLVYLK ACAQAFRDGN LKLADQLMDR IWNPASNELE SLEAESVVKK RKRWAEALVR  60
RAYRLYPNIP FVYFPHPHRS ICEKAILSVI MGKERVHIID FLLPNPDDWE DLLENSSRGP  120
DRPSSIRLSV IAPPLLKNVY ATFFEEAITS FALRVFWVNV KWEFKLVIAN SLADVDASEL  180
EFRRTEDEIV IVRYAYKMKR LLAQPGTMER ELFKLGQIKP EFVITVEQEA NHNSNFVDPL  240
ELLLEEFEDL STINYTSLSM CAVECDGMNG VEMAQLRSLL HAAGFLPFPL NQSEPTGGFV  300
QKENGCLVVS VERWPPVIIS AWKFTDSVHH SISMQAMFYI EPGCCCC*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007033232.2	0.0	PREDICTED: uncharacterized protein LOC18602030
TrEMBL	A0A061EPC4	0.0	A0A061EPC4_THECC; GRAS family transcription factor family protein
STRING	EOY04154	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	1e-36	GRAS family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG019414t1
Entrez Gene	18602026

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]