PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG019518t1
Common NameTCM_019518
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family TCP
Protein Properties Length: 441aa    MW: 48710 Da    PI: 9.6391
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG019518t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP154.18.3e-481122652136
               TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssasec........ea 75 
                       ++kkdrhski+T++g RdRRvRls+e+a++fFdLqd+LGfdk+skt+eWLl+++k ai el++            s+ss+ ec          
  Thecc1EG019518t1 112 PVKKDRHSKICTAQGVRDRRVRLSIEIAREFFDLQDMLGFDKASKTLEWLLTKSKNAIGELVKMkhgngssggqrSFSSSPECeivaengdL- 203
                       68**************************************************************9999998888866677677443322221. PP

               TCP  76 esssssas...nsssg.........kaaksaa.kskksqksaasalnlakesrakarararertrekmriknkl 136
                              +       +         +   s++ k kk qk +  ++ lakesrakarararertrekm++++++
  Thecc1EG019518t1 204 -------DggeL---EgttskskslEGVVSKEkKMKKLQKAT--VHLLAKESRAKARARARERTREKMCTRSST 265
                       .......22220...133444445533333331444444444..599***********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-45113261IPR005333Transcription factor, TCP
PROSITE profilePS5136935.967114172IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137012.483241258IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MQLHSAKTKY AIMFSSTNNI VNTFAHLPSS SYHPPPPPPL LISHDSNDTF PHHHHDLLSA  60
SSLLPANPHF TESLINMTLF NNAATMSKQD GGGALHGECF GTSSFGIPVR KPVKKDRHSK  120
ICTAQGVRDR RVRLSIEIAR EFFDLQDMLG FDKASKTLEW LLTKSKNAIG ELVKMKHGNG  180
SSGGQRSFSS SPECEIVAEN GDLDGGELEG TTSKSKSLEG VVSKEKKMKK LQKATVHLLA  240
KESRAKARAR ARERTREKMC TRSSTTTHEW KRCPDTSPQF LNPPRSLTQL EASKESEHSY  300
GHNMASSFKV FAHQVEQPSP CQLTSAASRE NAIEESIVIK RKLKPSTILG SQQNLAASKD  360
VSCSTSGNNY FPNLPQNWDI NGAMAHSTFC AITNVNLSTG TIQEYEPFLT FLLLTSFTNF  420
RLNFQVFKYL ANPERPASNQ *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017974553.10.0PREDICTED: transcription factor CYCLOIDEA
TrEMBLA0A061EIM90.0A0A061EIM9_THECC; LST1, putative
STRINGEOY042620.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67332744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.24e-30TCP family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Wang S, et al.
    A Rare SNP Identified a TCP Transcription Factor Essential for Tendril Development in Cucumber.
    Mol Plant, 2015. 8(12): p. 1795-808
    [PMID:26597500]