PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG019871t3
Common NameTCM_019871
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 143aa    MW: 15744 Da    PI: 9.5148
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG019871t3genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH162.2e-0532711054
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      + R +++ +++  L++l+ +      +K + a++L +A+eYI+ L
  Thecc1EG019871t3 32 KDRKEKLGERIVALQQLVSPY-----GKTDTASVLLEAMEYIRFL 71
                      6788889999999*****999.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.2E-102184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.0112271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-122487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-42877IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.38E-53276No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MENKRGPCSV DHSSFTSLAS KRQKADLSIS TKDRKEKLGE RIVALQQLVS PYGKTDTASV  60
LLEAMEYIRF LHEQVKVLSA PYLQTAPTNN MQDVEHYSLR SRGLCLVPIS CTAGVARSNG  120
ADIWAPIKTT SPKFEKAISQ FN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007033749.11e-103PREDICTED: transcription factor bHLH113 isoform X1
RefseqXP_007033750.11e-103PREDICTED: transcription factor bHLH113 isoform X2
RefseqXP_017975767.11e-103PREDICTED: transcription factor bHLH113 isoform X2
SwissprotQ7XJU26e-62BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A061EI751e-102A0A061EI75_THECC; Basic helix-loop-helix DNA-binding superfamily protein isoform 1
TrEMBLA0A061EIM21e-102A0A061EIM2_THECC; Basic helix-loop-helix DNA-binding superfamily protein isoform 3
STRINGEOY046751e-103(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.53e-64bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]