PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG019956t1

Common Name

TCM_019956

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

GRAS

Protein Properties

Length: 1660aa MW: 191184 Da PI: 6.4778

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG019956t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	126.9	2.3e-39	7	304	3	333
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs.Pilkf 93 ++L++cA+a+++++l+ a++lL+r+ +la+ + +++yf+eAL +r ++ +++ ++ f+ +s P + f Thecc1EG019956t1 7 DALVACAKAIQDENLTVADSLLERIWNLAAAQSwPGESDVVKYFAEALVRRAYG--------ISSASA-------------NFNLLSpPPIYF 78 68************************88888678899**********9........222222.............233333134556 PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfe.fnvlva 183 aI a g++r H i f W L+++La+ +++ s+R+ +++sp + k + e+ ++ L+ A e g+++e +v++a Thecc1EG019956t1 79 LDNFSCDAINTACMGKKRFHLITFLFLPSDDWTYLFRSLANASGNFLSVRVSVIVSPFLEkiVKIQQEKSKHDLTTAAMERGIKLEdLRVVYA 171 6666679*********************************************9777778888899999*********85788899 PP GRAS 184 krledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274 ++l d++ ++ ++ + +Ea++V ++lh+ll++ +e L +++++P++v++ eq adhn+++F +r+ ++++yy fd +e++ Thecc1EG019956t1 172 NSLGDVDASKADFTRttDEAVIVYYRYKLHELLADVRVMER----ELLKLRQINPEIVIIEEQYADHNDSNFIKRLEKSFQYYFNRFDFYEVT 260 9****99999889************77777777....55568**************************************9 PP GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333 r+ivn+v ceg++r erh+tl++Wr+ l++ G+ pvpl ++ Thecc1EG019956t1 261 ---------------YCRQIVNIVGCEGTDRLERHQTLAQWRSLLRANGLLPVPLAPDI 304 ...............4699*********************************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	20.234	1	325	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.9E-37	7	304	IPR005202	Transcription factor GRAS
PROSITE profile	PS50808	10.756	696	750	IPR003656	Zinc finger, BED-type
SMART	SM00614	7.6E-17	696	746	IPR003656	Zinc finger, BED-type
Pfam	PF02892	7.8E-9	699	743	IPR003656	Zinc finger, BED-type
SuperFamily	SSF57667	1.9E-7	699	747	No hit	No description
SuperFamily	SSF53098	2.65E-40	836	1291	IPR012337	Ribonuclease H-like domain
Pfam	PF14372	1.1E-15	1068	1159	IPR025525	hAT-like transposase, RNase-H fold
Pfam	PF05699	8.6E-17	1209	1290	IPR008906	HAT, C-terminal dimerisation domain
PROSITE profile	PS50600	16.761	1443	1627	IPR003653	Ulp1 protease family, C-terminal catalytic domain
SuperFamily	SSF54001	1.18E-33	1474	1655	No hit	No description
Pfam	PF02902	3.5E-24	1474	1653	IPR003653	Ulp1 protease family, C-terminal catalytic domain
Gene3D	G3DSA:3.30.310.130	1.1E-12	1502	1622	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006508	Biological Process	proteolysis
GO:0003677	Molecular Function	DNA binding
GO:0008234	Molecular Function	cysteine-type peptidase activity
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1660 aa Download sequence Send to blast
MSSSALDALV ACAKAIQDEN LTVADSLLER IWNLAAAQSW PGESDVVKYF AEALVRRAYG 60 ISSASANFNL LSPPPIYFLD NFSCDAINTA CMGKKRFHLI TFLFLPSDDW TYLFRSLANA 120 SGNFLSVRVS VIVSPFLEKI VKIQQEKSKH DLTTAAMERG IKLEDLRVVY ANSLGDVDAS 180 KADFTRTTDE AVIVYYRYKL HELLADVRVM ERELLKLRQI NPEIVIIEEQ YADHNDSNFI 240 KRLEKSFQYY FNRFDFYEVT YCRQIVNIVG CEGTDRLERH QTLAQWRSLL RANGLLPVPL 300 APDIWSGEHE DNGCVVFQND DGLLHFTSAW KLTDAVDHFN PISYNPIQGF NPNPALEDTV 360 RTLQVDRQAS SLNGLAAFAE IYDMLEDVCL KYELPLALTW VKGTPNGIMS GLNKKRSLSI 420 ETAYSYINCC YYYYYDYYVE KISQYRSFMQ ECAIYDIQEG QAIAGQALQS NEPFLFEPNI 480 TELRSNPFAE AAQKSGLHAA LAICLVNHYT DDVYILEFFL SSSEEKLEEP KSLALRIFED 540 LKKMKTKFVK LRVHGTEVGL QEEAIPNIPW EEMPMRSSSP ATSNDQFLNS NASRSLNVVE 600 LKDRHVVEIQ GPNGQEAATS NFHPAYLSIH ASSMAGTEHF NATNLRSYNG LLETHEPQLQ 660 EITEKNWISQ TISNIDHEIV KANRENSALP RTKQRKLVSK VWKEFTKFEE NGKQLAKCNH 720 CSKEFTGSSK SGTTHLKNHL ERCPRKKNEY QERQLKLSVK TGDLTNRDTS EGNSMFDQEK 780 SRLDLVKMII KHQYPLDVAE QEFFKSFVQN LQPMFEFQSQ ATIISDIHHI YEEEKKKLQQ 840 CFAQFACKFS LTISLWKDNL RKNAYCCLIA HFVDDDWELR RKILVFKNLE HNYGTGSIIR 900 VIQNSISEWN MSEKVCSISV DNSSLNNGIL QQIKESCLSD QVSLPSCHYY SSCTLIQDGL 960 HEIDDILLKL RKSIEYVTEL EHGKLKFQEA INQVTLQGGK STDYGPLRLD SNFSILDSAL 1020 ESRQIFCQLE QIDGHFKVNP SIEEWERALI LHSYLKGFYD NLSSFRQTHS STANTYFPQL 1080 CDMYKKFLQM EKKNYPFMMK RKFDDHWSLC NLVFAIAALL DPRLKFKFVE FSYGEIYGRD 1140 SKRQLKRFHR DLMDIYFEYA YEPRNRTTSA SVGCLTRQST ESANDSILDS FSRYASASNF 1200 NEVSSRKSDL DCYLEEPLLH LDGAFFDVLD WWRVNSERFP TLGRMAHDLL AMPVLVVPPC 1260 SDFSAVITNP AHNGLNPETM EALVCSHNWL EMPKGNDRAN HAPMQNTAKR KWEEKETREV 1320 KSCKNWNSEE TNNADKAKAS YKMLTRALPL ENDRQEGRPL KSSEPNHGKD TSGLIEIPNG 1380 SPSFDNQSEF QCYSSDESDG EIAGREQGEW REDDVRRYLL LPLTEKGRKR LNKWRNHKMS 1440 GKLIGRDKEF GVLDYKLAPL LTVPHGVETQ VKYYIDDSVV NTFFKLLKKR SDRFPKAYVS 1500 HYSFDSWIAT YLIEGSRSES QVFSWFKDEK LKDVQILFLP ACLSAHWVLF CVDTKKRTFS 1560 WLDSNISSRT SNVAEKQAIL GWFKRLLLPA FGYQNANEWP FEIRSDIPEQ KNGVDCGLFV 1620 MKYADCLTHG EFFPFTQQHM PYFRLRTFLD IYRGRLHSQ*

Sequence ? help Back to Top

Protein Sequence Length: 1660 aa Download sequence Send to blast

MSSSALDALV ACAKAIQDEN LTVADSLLER IWNLAAAQSW PGESDVVKYF AEALVRRAYG  60
ISSASANFNL LSPPPIYFLD NFSCDAINTA CMGKKRFHLI TFLFLPSDDW TYLFRSLANA  120
SGNFLSVRVS VIVSPFLEKI VKIQQEKSKH DLTTAAMERG IKLEDLRVVY ANSLGDVDAS  180
KADFTRTTDE AVIVYYRYKL HELLADVRVM ERELLKLRQI NPEIVIIEEQ YADHNDSNFI  240
KRLEKSFQYY FNRFDFYEVT YCRQIVNIVG CEGTDRLERH QTLAQWRSLL RANGLLPVPL  300
APDIWSGEHE DNGCVVFQND DGLLHFTSAW KLTDAVDHFN PISYNPIQGF NPNPALEDTV  360
RTLQVDRQAS SLNGLAAFAE IYDMLEDVCL KYELPLALTW VKGTPNGIMS GLNKKRSLSI  420
ETAYSYINCC YYYYYDYYVE KISQYRSFMQ ECAIYDIQEG QAIAGQALQS NEPFLFEPNI  480
TELRSNPFAE AAQKSGLHAA LAICLVNHYT DDVYILEFFL SSSEEKLEEP KSLALRIFED  540
LKKMKTKFVK LRVHGTEVGL QEEAIPNIPW EEMPMRSSSP ATSNDQFLNS NASRSLNVVE  600
LKDRHVVEIQ GPNGQEAATS NFHPAYLSIH ASSMAGTEHF NATNLRSYNG LLETHEPQLQ  660
EITEKNWISQ TISNIDHEIV KANRENSALP RTKQRKLVSK VWKEFTKFEE NGKQLAKCNH  720
CSKEFTGSSK SGTTHLKNHL ERCPRKKNEY QERQLKLSVK TGDLTNRDTS EGNSMFDQEK  780
SRLDLVKMII KHQYPLDVAE QEFFKSFVQN LQPMFEFQSQ ATIISDIHHI YEEEKKKLQQ  840
CFAQFACKFS LTISLWKDNL RKNAYCCLIA HFVDDDWELR RKILVFKNLE HNYGTGSIIR  900
VIQNSISEWN MSEKVCSISV DNSSLNNGIL QQIKESCLSD QVSLPSCHYY SSCTLIQDGL  960
HEIDDILLKL RKSIEYVTEL EHGKLKFQEA INQVTLQGGK STDYGPLRLD SNFSILDSAL  1020
ESRQIFCQLE QIDGHFKVNP SIEEWERALI LHSYLKGFYD NLSSFRQTHS STANTYFPQL  1080
CDMYKKFLQM EKKNYPFMMK RKFDDHWSLC NLVFAIAALL DPRLKFKFVE FSYGEIYGRD  1140
SKRQLKRFHR DLMDIYFEYA YEPRNRTTSA SVGCLTRQST ESANDSILDS FSRYASASNF  1200
NEVSSRKSDL DCYLEEPLLH LDGAFFDVLD WWRVNSERFP TLGRMAHDLL AMPVLVVPPC  1260
SDFSAVITNP AHNGLNPETM EALVCSHNWL EMPKGNDRAN HAPMQNTAKR KWEEKETREV  1320
KSCKNWNSEE TNNADKAKAS YKMLTRALPL ENDRQEGRPL KSSEPNHGKD TSGLIEIPNG  1380
SPSFDNQSEF QCYSSDESDG EIAGREQGEW REDDVRRYLL LPLTEKGRKR LNKWRNHKMS  1440
GKLIGRDKEF GVLDYKLAPL LTVPHGVETQ VKYYIDDSVV NTFFKLLKKR SDRFPKAYVS  1500
HYSFDSWIAT YLIEGSRSES QVFSWFKDEK LKDVQILFLP ACLSAHWVLF CVDTKKRTFS  1560
WLDSNISSRT SNVAEKQAIL GWFKRLLLPA FGYQNANEWP FEIRSDIPEQ KNGVDCGLFV  1620
MKYADCLTHG EFFPFTQQHM PYFRLRTFLD IYRGRLHSQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ckg_A	2e-20	1474	1656	47	224	SENTRIN-SPECIFIC PROTEASE 1
2ckg_B	2e-20	1474	1656	47	224	SENTRIN-SPECIFIC PROTEASE 1
2ckh_A	2e-20	1474	1656	47	224	SENTRIN-SPECIFIC PROTEASE 1
6nnq_A	1e-20	1474	1656	46	223	Sentrin-specific protease 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017974961.1	0.0	PREDICTED: uncharacterized protein LOC18602419 isoform X1
Refseq	XP_017974962.1	0.0	PREDICTED: uncharacterized protein LOC18602419 isoform X1
TrEMBL	A0A061EJG7	0.0	A0A061EJG7_THECC; Uncharacterized protein
STRING	EOY04778	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8809	4	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01570.1	3e-44	GRAS family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG019956t1
Entrez Gene	18602419

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]