PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG020031t1

Common Name

TCM_020031

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

FAR1

Protein Properties

Length: 245aa MW: 28225.7 Da PI: 7.5425

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG020031t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.7	7.2e-27	75	166	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr.traetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+ Y++++GF++r++++++s ++++i+ r+fvCskeg+r+e+ +k+e + +r+ tr gC+a+l++ ++ gkw+++ + +eHnHel+p Thecc1EG020031t1 75 EFYEMYGRRMGFTIRNNRTRRSLKDNSIIGREFVCSKEGFRAEKYTKREYRVCpSRPATREGCNAMLRIAAKDGGKWVIYGFIKEHNHELNP 166 6****************************************9988443333599*******************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-23	75	166	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MASTSGQGLN SSRNYRQWLA ETFDGHETLD DELSDSNVDG NGNLISPLDQ NFPMTLEAGE 60 PYTGMEFESA EAAREFYEMY GRRMGFTIRN NRTRRSLKDN SIIGREFVCS KEGFRAEKYT 120 KREYRVCPSR PATREGCNAM LRIAAKDGGK WVIYGFIKEH NHELNPSKIP PRRSHRIAFC 180 EDEKDLKIRE LSTELHREKK KSAAYLEQLQ MVLKYVEEHT QRLSLKVDVV SGNLRELESV 240 DRIF*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007033939.2	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Refseq	XP_017974712.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Refseq	XP_017974713.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	1e-28	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A061EIL1	0.0	A0A061EIL1_THECC; Far-red impaired responsive family protein
STRING	EOY04865	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18086	8	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	4e-48	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG020031t1
Entrez Gene	18602480

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]