PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG020033t2

Common Name

TCM_020033

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

FAR1

Protein Properties

Length: 217aa MW: 24976.3 Da PI: 6.3996

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG020033t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	89.4	5e-28	66	153	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY+eYA++vGF +r+ +s+ks+ +g+i++r++ C+keg++ +++k+ + + r+r+++r gC a++ vk+ek g+w+++k+++eH+H+l Thecc1EG020033t2 66 FYDEYARRVGFLTRIISSRKSELDGSIIHRRLACNKEGFNLNRQKNGRVQIRKRESKREGCMARMIVKREKPGRWVISKFVKEHTHPL 153 9*******************************************99999*********************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.3E-25	66	154	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MDHKIVIRES CIESESDVCE ADTNKEETFL ITESCTGDES GLCELNLNQE PHEGMLFESV 60 QAAKAFYDEY ARRVGFLTRI ISSRKSELDG SIIHRRLACN KEGFNLNRQK NGRVQIRKRE 120 SKREGCMARM IVKREKPGRW VISKFVKEHT HPLLITSVNG QPNPMQQDDK DKKIQELSSE 180 LVNANQELMA CREQLCAFMN YIEEHTEHLS KTVEDR*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017974714.1	1e-161	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	1e-23	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A061EKE5	1e-160	A0A061EKE5_THECC; Far-red impaired responsive family protein isoform 2
STRING	EOY04866	1e-158	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	2e-49	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG020033t2
Entrez Gene	18602481

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]