PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG020035t1

Common Name

TCM_020035

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

FAR1

Protein Properties

Length: 212aa MW: 24290.8 Da PI: 8.1302

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG020035t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.2	2e-26	46	134	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA++vGF +r+ + ++s+r+g+i r++ C+keg+ + + k r++r++tr gCka++++k +k+gkw++t+++++HnH+l+ Thecc1EG020035t1 46 FYDEYARRVGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFGPVRKPRPSTREGCKAMIHIKFDKSGKWVITRFVKDHNHPLV 134 9************************************99999998**************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.9E-24	46	134	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MDLDEGAEAI ESFTGGETVA VPCEGDSIVE PHEGMEFESE DAAKIFYDEY ARRVGFVMRV 60 MSCRRSERDG RILARRLGCN KEGYCVSIRG KFGPVRKPRP STREGCKAMI HIKFDKSGKW 120 VITRFVKDHN HPLVVAPREA RQTMDEKDKK IQELTAELRN KKRLCAAYQE QLTAFMKIVE 180 EHSNQLSKKV QNVVNNLKEY ESIELELLQH R*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007033943.1	1e-157	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Refseq	XP_021290971.1	1e-157	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A061ERC2	1e-156	A0A061ERC2_THECC; Far-red impaired responsive (FAR1) family protein
STRING	EOY04869	1e-156	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3918	28	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-114	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG020035t1
Entrez Gene	18602483

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]