PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG020222t1
Common NameTCM_020222
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family HSF
Protein Properties Length: 491aa    MW: 55349 Da    PI: 5.3006
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG020222t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.23.5e-35211112101
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl k+y++++d+++++++sws+n++sfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F k++k+ll
  Thecc1EG020222t1  21 FLLKTYDMVDDSSTDDIVSWSSNKKSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEDFVKDQKHLL 104
                       9****************************************************************999.........**************** PP

                       XXXXXXX CS
      HSF_DNA-bind  95 ekikrkk 101
                       ++i+r+k
  Thecc1EG020222t1 105 KNIHRRK 111
                       *****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467856.53E-3617110IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.4E-3817110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.7E-6017110IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.0E-3121110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.6E-192144IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.6E-195971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.6E-197284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MDPTAPSASG GGGGGGGPAP FLLKTYDMVD DSSTDDIVSW SSNKKSFVVW NPPEFARLLL  60
PTYFKHNNFS SFIRQLNTYG FRKIDPERWE FANEDFVKDQ KHLLKNIHRR KPIHSHSHPQ  120
GSLIDPERAG FEEEIEKLSR EKAALEANVL RFRQERSAAK HQLEELAQRA DQMERRQDTL  180
FNFLEKAAQD PIFVEHLVRK IESMDVTAYN KKRRLPQVDQ IKPVGENSLL DNNSSSRSEF  240
GNIFHQDFSN KLRLELSPAV SDINLVSHST QSSNEDGVSP QRRISEGEPK DAQTRPEGLL  300
FTPETLDLSD TGTSFTFKMD SSFTQRVPMN ESPPVHSLQQ RLNSNEEPDS HISCQLNLTL  360
ASSSLHVNRS PSLTRMSQQG QETGKGPESR SNANTKDSDT RAFENNRNMV DDEAALSSPI  420
EAPNINQEPA APPVRVNDIF WEQFLTERPG SSENEEASSS YRANPYEEQE DKRSGYGLLR  480
NAKNMEQLSL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-211211017129Heat shock factor protein 1
5d5v_B5e-211211017129Heat shock factor protein 1
5d5v_D5e-211211017129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017975850.10.0PREDICTED: heat stress transcription factor A-5
SwissprotQ94BZ50.0HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLA0A061ES530.0A0A061ES53_THECC; Winged-helix DNA-binding transcription factor family protein
STRINGEOY051390.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101342433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.10.0HSF family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Reňák D,Gibalová A,Solcová K,Honys D
    A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein.
    Plant Cell Environ., 2014. 37(3): p. 670-83
    [PMID:23961845]