PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG020437t1
Common NameTCM_020437
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family GATA
Protein Properties Length: 244aa    MW: 26930.1 Da    PI: 8.2858
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG020437t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.31.2e-19165199135
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C++Cg+ kTp+WR gp g+ktLCnaCG++y++ +l
  Thecc1EG020437t1 165 CQHCGAEKTPQWRAGPLGPKTLCNACGVRYKSGRL 199
                       *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.8E-15159221No hitNo description
Gene3DG3DSA:3.30.50.105.7E-15159197IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.44159195IPR000679Zinc finger, GATA-type
SMARTSM004011.2E-15159209IPR000679Zinc finger, GATA-type
CDDcd002022.27E-14164212No hitNo description
PROSITE patternPS003440165190IPR000679Zinc finger, GATA-type
PfamPF003203.4E-17165199IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MEAFDMAASF DENLLDFGSD VGEEDEDEEN NKSSKLNTSS SLNANRSFPE FAEEELEWIS  60
NKDAFPSVET FVDILGTAAK HQSPVSVLDN SNSSSNSSGS STLTNGNIVM YCCGNLKVPV  120
KARSKRLRKC RDLRNQENSW WVQENVKNAS AHVKGAGSRT IGRKCQHCGA EKTPQWRAGP  180
LGPKTLCNAC GVRYKSGRLV PEYRPASSPT FSIELHSNSH RKILEMRRQK QFGFSAMKPM  240
DKG*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007034503.10.0PREDICTED: GATA transcription factor 1
SwissprotQ8LAU96e-56GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A061ESZ50.0A0A061ESZ5_THECC; GATA transcription factor 1, putative
STRINGEOY054290.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM129872430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.13e-46GATA transcription factor 1
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]