PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG020787t1

Common Name

TCM_020787

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 239aa MW: 27617.7 Da PI: 9.2679

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG020787t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.5	1e-07	85	129	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h ++Er RR++ + ++ L ++lP+ +K++K +i++ A + +++L Thecc1EG020787t1 85 HMMNERMRREKQKRSYCSLHSMLPPG-----TKNDKNSIVQTAANRVREL 129 889*********************96.....7899999999998887777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.31E-10	77	145	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.20E-5	78	130	No hit	No description
PROSITE profile	PS50888	11.293	80	129	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.0E-5	85	129	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-8	85	150	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MDQLIKELLQ GEIFWYEATP APPVRQSAFV PYPNTPRIGL GLERAGCSNG VNSGNMNKRM 60 IEFLMKSWPT TRETRDTEQD RCFRHMMNER MRREKQKRSY CSLHSMLPPG TKNDKNSIVQ 120 TAANRVRELE WLKKDLEKKN HELESNLAAM TDVKINEGTQ ITVRLDNPTS GIDSMLGVLK 180 CLKKLDSKPR MIQSEFTNQE FVAVMDIETE IRAAEIEKAV NRTLQEAERK LQQRWTRC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	90	97	MRREKQKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007034978.1	1e-179	PREDICTED: transcription factor bHLH92
TrEMBL	A0A061EUE1	1e-178	A0A061EUE1_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRING	EOY05904	1e-179	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9602	25	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	2e-38	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG020787t1
Entrez Gene	18603128

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]