PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG020818t1
Common NameTCM_020818
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C2H2
Protein Properties Length: 233aa    MW: 25992 Da    PI: 9.6564
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG020818t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.4e-056183123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y+C+ C++ F++   L  H+++H
  Thecc1EG020818t1 61 YTCSFCKREFRSAQALGGHMNVH 83
                      9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.51E-65887No hitNo description
PROSITE profilePS5015711.246188IPR007087Zinc finger, C2H2
PfamPF139121.5E-66184IPR007087Zinc finger, C2H2
SMARTSM003550.00386183IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0009755Biological Processhormone-mediated signaling pathway
GO:0010093Biological Processspecification of floral organ identity
GO:0010160Biological Processformation of organ boundary
GO:0042127Biological Processregulation of cell proliferation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MERNSFSNSL KDHSIGSKAI KDSSSNYDNQ NNFKLKDTRS SNNQGFGEDY LAGFSWPPRS  60
YTCSFCKREF RSAQALGGHM NVHRRDRARL RQSPPRDHGQ PPCLNLNLYP NPNPNPNFSS  120
SSLVSSPFSS TLPSLVSPPL SSLSSSFASP SHEMKKWRVN GTLMDPLSSK GSDSTNMTKG  180
AKSFYGVKEL KDYECNKFLK KTEYVRLDLD LEIGLVSDSK KDLDLELRLG YS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-145683229superman protein
2l1o_A2e-145683229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ4184715e-32HQ418471.1 Malus x domestica transcriptional regulator superman (SUP5b) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007035035.21e-167PREDICTED: transcriptional regulator SUPERMAN
TrEMBLA0A061EM841e-168A0A061EM84_THECC; C2H2 and C2HC zinc fingers superfamily protein, putative
STRINGEOY059611e-169(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81092432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.13e-26C2H2 family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]