PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG020819t1
Common NameTCM_020819
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C2H2
Protein Properties Length: 183aa    MW: 20416.7 Da    PI: 5.9443
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG020819t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000143456123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y+C+ C++ F++   L  H++ H
  Thecc1EG020819t1 34 YECTFCKRGFTNAQALGGHMNIH 56
                      99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-52960IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.78E-73060No hitNo description
PROSITE profilePS5015711.4683461IPR007087Zinc finger, C2H2
SMARTSM003550.00973456IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803656IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MESGKQGSSD ASSEENDRVD RVKGDTAATT KRSYECTFCK RGFTNAQALG GHMNIHRKDR  60
AKAKQPTSSS VPSEPMNEDY MNPGYLPPIS TEPPKYYPVL EAQRNYHMYL QPPVSSPTLP  120
YGYYESDFLV PARSQSLSMN EELLGANLSL QIGPTHVDDR EVRRGIIKED EVDLELRLGH  180
HP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007035036.11e-134PREDICTED: transcriptional regulator SUPERMAN
TrEMBLA0A061ENL31e-133A0A061ENL3_THECC; C2H2 and C2HC zinc fingers superfamily protein, putative
STRINGEOY059621e-134(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91682435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.12e-16C2H2 family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]