PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG020870t1
Common NameTCM_020870
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 259aa    MW: 29275.4 Da    PI: 9.6644
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG020870t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-19126177256
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       +y+GVr+++ +g+++AeIrdp+  g  +r +lg+f+taeeAa+a+++a+ +l+g+
  Thecc1EG020870t1 126 RYRGVRRRP-WGKYAAEIRDPTRHG--ARSWLGTFDTAEEAARAYDRAAFNLRGH 177
                       59*******.**********96544..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.8E-36126190IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.5E-31126186IPR001471AP2/ERF domain
PROSITE profilePS5103224.698126184IPR001471AP2/ERF domain
CDDcd000182.21E-29126185No hitNo description
SuperFamilySSF541712.94E-23126185IPR016177DNA-binding domain
PfamPF008475.0E-14126177IPR001471AP2/ERF domain
PRINTSPR003676.9E-11127138IPR001471AP2/ERF domain
PRINTSPR003676.9E-11150166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MMPAACSGSQ LAWLARPGHQ NAFSGTVFGL DFGRFQSQSG PVLLIYDLVE LLSLFLTGNR  60
LQMVLCISFW KVKKGIRKIN LLLGAKHRVV VYVQKLYLWK CHDMGKSMED PNKGKEKEEK  120
GRDEIRYRGV RRRPWGKYAA EIRDPTRHGA RSWLGTFDTA EEAARAYDRA AFNLRGHLAI  180
LNFPNEYYSQ VMGSSSPYPA STMSSYLSSS VNAGNISERG SSSSSGQQKQ VIEFEYLDDK  240
VLEELLETEE EKKKRMKD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-321212419114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017974790.11e-107PREDICTED: ethylene-responsive transcription factor ERF098
SwissprotQ9LTC55e-49ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A061EMW20.0A0A061EMW2_THECC; Integrase-type DNA-binding superfamily protein
STRINGEOY060180.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.13e-28ERF family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]