PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG021050t1
Common NameTCM_021050
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family M-type_MADS
Protein Properties Length: 156aa    MW: 17902.1 Da    PI: 10.3762
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG021050t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.73.6e-141150342
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
            SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                      i n+s r+ t+ kR++g+lKK +EL +LC++ ++ iifs 
  Thecc1EG021050t1 11 IPNESVRKATLKKRKAGLLKKLSELTTLCGVTACAIIFSG 50
                      889***********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.8E-19160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.385149IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-21184IPR002100Transcription factor, MADS-box
CDDcd002664.48E-25285No hitNo description
PRINTSPR004042.6E-7323IPR002100Transcription factor, MADS-box
PfamPF003191.6E-141151IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-72338IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-73859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MGRKKVKHEL IPNESVRKAT LKKRKAGLLK KLSELTTLCG VTACAIIFSG YNTQPDVWPS  60
PIEAFHVLDK FNNLPAEKQG KYMMDQKVLL RRIMSQMNET LEKQREKNRE LEVKLALAET  120
NYDFNSLQRS EELVHLLKEK IKFVMNKIES KGLKG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKHELIPNESVRKATLKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017975171.11e-110PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A061EVH01e-110A0A061EVH0_THECC; AGAMOUS-like 87, putative
STRINGEOY062541e-110(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.24e-27AGAMOUS-like 87
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]