PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG021144t1

Common Name

TCM_021144

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 235aa MW: 26825.6 Da PI: 8.9605

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG021144t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.6	5.2e-09	86	130	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + Er RR+++ + ++ L++++P++ +K + +i+ +++ YI+sL+ Thecc1EG021144t1 86 KKERDRREKMAENYDLLQSMVPNL----FPKATREMIVGETIAYIQSLE 130 57*******************8....39***************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.007	79	129	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.1E-5	85	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.0E-6	86	130	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.7E-10	87	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-9	87	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.30E-4	88	133	No hit	No description
Pfam	PF03189	2.1E-5	98	216	IPR004878	Otopetrin

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MQKQRKKERE RKMEDQQNWK GEEEEESEIN ELLCSIMEGY NDKLIPPLSQ FSPSRQAAAA 60 IVEEKGSSSR ERGRAKEAKE VTESLKKERD RREKMAENYD LLQSMVPNLF PKATREMIVG 120 ETIAYIQSLE KEITRMEELK NSSESSKGKM HLYSNRNSSI DVTVSSNVVF FGIQSMVRPR 180 LVTDIFMVLH KHKAEVLGAN VAVNHRQLTL TVTAVVNGNR DRTIEKIKGD ILIL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007035491.1	1e-172	PREDICTED: transcription factor TT8 isoform X2
TrEMBL	A0A061EPZ0	1e-171	A0A061EPZ0_THECC; Uncharacterized protein
STRING	EOY06417	1e-171	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM27980	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	9e-13	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG021144t1
Entrez Gene	18603443

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]