PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG021164t1
Common NameTCM_021164
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 329aa    MW: 36296.9 Da    PI: 4.7576
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG021164t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.19.4e-184997355
               AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      + GVr+++ +gr++AeIrdp++   + r++lg+f+ta+eAa a+++a+++++g
  Thecc1EG021164t1 49 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAALAYDRAALSMKG 97
                      56******.**********965...5************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.9E-3248111IPR001471AP2/ERF domain
PROSITE profilePS5103220.57448105IPR001471AP2/ERF domain
CDDcd000182.77E-2848104No hitNo description
Gene3DG3DSA:3.30.730.104.9E-2849105IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-2049106IPR016177DNA-binding domain
PRINTSPR003671.2E-74960IPR001471AP2/ERF domain
PfamPF008473.7E-115197IPR001471AP2/ERF domain
PRINTSPR003671.2E-77187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010102Biological Processlateral root morphogenesis
GO:0010432Biological Processbract development
GO:0010451Biological Processfloral meristem growth
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MSTSKTLDKP FGYEPVQTQA GFALLQRNTS PSQPGERRGR RKQAEPGRFL GVRRRPWGRY  60
AAEIRDPTTK ERHWLGTFDT AQEAALAYDR AALSMKGTQA RTNFLYSDNT TFHSLLTPFD  120
VQAILPTSQF LTSSQPKQAT NHNSAPQPDI SHSKTPIQSN NDPSSADETP YGSVDDNSFF  180
LSGDTNSGYL ACVVPDNCLK PPSTPTSPRV SNFCSMSQNF RENQSHFDNY ALPPDITSLP  240
KSDNMEFPGF DELNQGFWSD QQSWEMNSNE LSAMINPPLL VEDGCMGASY PYNDSASYNM  300
IPQATSSVTC SPSMPPFGDV VDFGYSPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-2039104571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00520DAPTransfer from AT5G18560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007035521.20.0PREDICTED: ethylene-responsive transcription factor ERF086
TrEMBLA0A061EQ200.0A0A061EQ20_THECC; AP2/ERF domain-containing transcription factor, putative
STRINGEOY064470.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54872650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.13e-67ERF family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]