PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG021185t1

Common Name

TCM_021185

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

NF-YB

Protein Properties

Length: 167aa MW: 18358.4 Da PI: 5.3643

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG021185t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	170.6	1.8e-53	17	112	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 +eq+r+lPianv+rimk++lP nakisk+aket+qecvsefisfvtseas+kc++e+rkt+ngdd++walatlGf+dy+ pl+ yl+kyrele Thecc1EG021185t1 17 KEQERLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALATLGFDDYAVPLRRYLHKYRELE 109 89******************************************************************************************* PP NF-YB 95 gek 97 g+k Thecc1EG021185t1 110 GDK 112 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	5.2E-53	12	131	IPR009072	Histone-fold
SuperFamily	SSF47113	3.89E-40	19	132	IPR009072	Histone-fold
Pfam	PF00808	6.7E-28	22	86	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	7.1E-18	50	68	No hit	No description
PROSITE pattern	PS00685	0	53	69	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	7.1E-18	69	87	No hit	No description
PRINTS	PR00615	7.1E-18	88	106	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MAENAGASAS NDDGGIKEQE RLLPIANVGR IMKQILPPNA KISKEAKETM QECVSEFISF 60 VTSEASEKCR KERRKTVNGD DICWALATLG FDDYAVPLRR YLHKYRELEG DKAANQDKVG 120 NSNTDQDREE PSSYGRNQTI NQAVAPTPLK FSMIGSSNNS NLGPFN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	2e-43	16	107	1	92	Transcription factor HapC (Eurofung)
4g92_B	2e-43	16	107	1	92	Transcription factor HapC (Eurofung)
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007035553.2	1e-121	PREDICTED: nuclear transcription factor Y subunit B-4
Refseq	XP_021291332.1	1e-121	nuclear transcription factor Y subunit B-4-like
Swissprot	O82248	3e-57	NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBL	A0A061EW30	1e-121	A0A061EW30_THECC; Nuclear transcription factor Y subunit B-5
STRING	EOY06479	1e-121	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM255	28	229

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	1e-59	nuclear factor Y, subunit B5

Link Out ? help Back to Top
Phytozome	Thecc1EG021185t1
Entrez Gene	18603481

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]