PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG021303t1
Common NameTCM_021303
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family GATA
Protein Properties Length: 148aa    MW: 16079.3 Da    PI: 10.4239
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG021303t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.77.8e-194074135
              GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                      C+ Cgt+kTplWR gp g+k+LCnaCG++ rkk++
  Thecc1EG021303t1 40 CADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRR 74
                      ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577166.65E-133374No hitNo description
SMARTSM004012.3E-133485IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.3083470IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-153874IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.16E-123989No hitNo description
PfamPF003208.7E-174074IPR000679Zinc finger, GATA-type
PROSITE patternPS0034404065IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MLDPSEKGSE SEDRSKKYPE GISVKETQNQ SFSNETKKTC ADCGTSKTPL WRGGPAGPKS  60
LCNACGIRSR KKRRAILGLN KGEDKKSKRG SNSSSKNLGD NLKQRLLSLG REVLMQRSTV  120
EKQRKKLGEE EQAAVLLMAL SCGSVYA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00335DAPTransfer from AT3G06740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017974157.11e-100PREDICTED: GATA transcription factor 15
SwissprotQ8LG104e-54GAT15_ARATH; GATA transcription factor 15
TrEMBLA0A061EPR11e-101A0A061EPR1_THECC; GATA transcription factor 15, putative
STRINGEOY066431e-101(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50502652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.17e-53GATA transcription factor 15
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  4. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]