PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG021327t1

Common Name

TCM_021327

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

CAMTA

Protein Properties

Length: 908aa MW: 102599 Da PI: 7.0838

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG021327t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	164.2	2.3e-51	31	146	3	118
CG-1 3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 + ++rwl+++ei+aiL n++ + ++ ++ + pksg ++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+++nptf Thecc1EG021327t1 31 EARSRWLRPNEIHAILCNHKYFPIHVKPMNLPKSGIIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPTFV 123 459**************************************************************************************** PP CG-1 96 rrcywlLeeelekivlvhylevk 118 rrcywlL+++le+ivlvhy+e++ Thecc1EG021327t1 124 RRCYWLLDKTLEHIVLVHYRETQ 146 ******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	77.236	25	151	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	3.2E-74	29	146	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	9.1E-46	31	144	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	1.82E-12	363	449	IPR014756	Immunoglobulin E-set
Gene3D	G3DSA:1.25.40.20	1.5E-18	534	660	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	2.95E-19	535	659	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	8.0E-9	539	627	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	6.09E-17	553	657	No hit	No description
PROSITE profile	PS50297	17.157	565	669	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	12.155	598	630	IPR002110	Ankyrin repeat
SMART	SM00248	1.7E-6	598	627	IPR002110	Ankyrin repeat
SMART	SM00248	3200	637	668	IPR002110	Ankyrin repeat
PROSITE profile	PS50096	6.632	746	772	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.126	762	791	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.1	862	882	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.51	862	889	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 908 aa Download sequence Send to blast
MDGDRPGRLV GTEIHGFHTL EDLDVQNTME EARSRWLRPN EIHAILCNHK YFPIHVKPMN 60 LPKSGIIVLF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGQDNP 120 TFVRRCYWLL DKTLEHIVLV HYRETQESQG SPATPVNSNS SSISDQSTPL LVTEEFDSGA 180 GNINYEEPSG LTVRNHEMRL HEINTLEWDD LLVTNDTNDS TLSRRDKDSF FNQGSQIAAN 240 GFSNDDGHTS AYNLSTGISS LGNLTDPVAQ SNNAYINYPE GICNQVSGGQ VNSNVQRKDF 300 RVIGTGDSLD LLVDDGLQSQ DSFGRWINYI ITESPGSVDD PVPESSISSG QEAITSPEQI 360 FSITGVSPAW AYTTEKTKIL VTGVFHQAYQ HLVKSNLFCV CGDVCIPAEL IQVGVYCCSL 420 SEHSPGLVNL YMSLDGHKPI SQVLSFEYRV PVLHDPIPPL EDESRWEEFQ LQMRLAYLLF 480 STSQSLNILS GKVSPNTLKE AKKFALKTTN ISKSWAYLIK SIEENRVSFT QAKDSLLEIA 540 LKSKLKDWLL ERIIEGCKTT EYDAQGQGVL HLCAILGYTW AIYLFSWSGL SLDFRDKHGW 600 TALHWAAYYG REKMVAVLLS AGAKPNLVTD PTAQNPSGRT AADLASLKGY DGLAAYLSEE 660 ALVAQFNDMA VAGNASGSLE TSRTETTNRE NLNEEELYLK ETLAAYRTAA DAAARIHTAF 720 REQSLKMRTK AVQFSNPEDE ARNIVAALKI QHAFRNFETR KKMAAAARIQ YRFRTWKIRK 780 DFLALRRQAA AFRGFQVRRQ YRKIIWSVGV LEKAILRWRL KRKGFRGLQV NTVEPVGEPK 840 QESVTEEDFY RTSRKQAEER VEKAVVCVQS MFRSKKAQQE YRRMKMVHEL AMLEYESLLD 900 PSSDMDA*

Sequence ? help Back to Top

Protein Sequence Length: 908 aa Download sequence Send to blast

MDGDRPGRLV GTEIHGFHTL EDLDVQNTME EARSRWLRPN EIHAILCNHK YFPIHVKPMN  60
LPKSGIIVLF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGQDNP  120
TFVRRCYWLL DKTLEHIVLV HYRETQESQG SPATPVNSNS SSISDQSTPL LVTEEFDSGA  180
GNINYEEPSG LTVRNHEMRL HEINTLEWDD LLVTNDTNDS TLSRRDKDSF FNQGSQIAAN  240
GFSNDDGHTS AYNLSTGISS LGNLTDPVAQ SNNAYINYPE GICNQVSGGQ VNSNVQRKDF  300
RVIGTGDSLD LLVDDGLQSQ DSFGRWINYI ITESPGSVDD PVPESSISSG QEAITSPEQI  360
FSITGVSPAW AYTTEKTKIL VTGVFHQAYQ HLVKSNLFCV CGDVCIPAEL IQVGVYCCSL  420
SEHSPGLVNL YMSLDGHKPI SQVLSFEYRV PVLHDPIPPL EDESRWEEFQ LQMRLAYLLF  480
STSQSLNILS GKVSPNTLKE AKKFALKTTN ISKSWAYLIK SIEENRVSFT QAKDSLLEIA  540
LKSKLKDWLL ERIIEGCKTT EYDAQGQGVL HLCAILGYTW AIYLFSWSGL SLDFRDKHGW  600
TALHWAAYYG REKMVAVLLS AGAKPNLVTD PTAQNPSGRT AADLASLKGY DGLAAYLSEE  660
ALVAQFNDMA VAGNASGSLE TSRTETTNRE NLNEEELYLK ETLAAYRTAA DAAARIHTAF  720
REQSLKMRTK AVQFSNPEDE ARNIVAALKI QHAFRNFETR KKMAAAARIQ YRFRTWKIRK  780
DFLALRRQAA AFRGFQVRRQ YRKIIWSVGV LEKAILRWRL KRKGFRGLQV NTVEPVGEPK  840
QESVTEEDFY RTSRKQAEER VEKAVVCVQS MFRSKKAQQE YRRMKMVHEL AMLEYESLLD  900
PSSDMDA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017974984.1	0.0	PREDICTED: calmodulin-binding transcription activator 5
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A061EWS0	0.0	A0A061EWS0_THECC; Calmodulin binding,transcription regulators, putative isoform 1
STRING	EOY06673	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4021	27	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Link Out ? help Back to Top
Phytozome	Thecc1EG021327t1
Entrez Gene	18603613

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]