PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG021350t1

Common Name

TCM_021350

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

GRAS

Protein Properties

Length: 458aa MW: 50849.3 Da PI: 5.7366

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG021350t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	273.5	6.7e-84	64	434	4	374
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl....fsevsPil 91 lLl+ A+ v+s+++e a+++L+ l+s++g+++qR+++yf +AL++++ + ++ +++ka +++ + ++ +e++ +l+ s P++ Thecc1EG021350t1 64 LLLASADKVDSRQFEHARKFLNLCDFLSSNAGSSIQRVVHYFSKALREKMDGeTGATTSKAGESRGGELSHPDETMVSLNPalitCSLKLPFV 156 799***********************************************66667777777776655553333333322322255567* PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183 ++++++ qaI e v+++++vH iD+ i G+Q aL+qaLa+R+ + l++T+vg +s+++++etg+rLa+fAe+l++pf fn++++ Thecc1EG021350t1 157 QVTQFAGLQAIIENVASAKKVHFIDLAIRSGAQCTALMQALATRDqCSIELLKVTAVGT---TSQTKMKETGKRLARFAEALNIPFLFNTVMV 246 *******************************************445569****...689************************ PP GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276 ++l+d++ ++++++ +Ea++V++ + l ++l +s +les ++++vk+l+P +vv++e eadh+s+ F+erf+eal++y++ fd+le + Thecc1EG021350t1 247 TDLKDISEDMFELNDDEAVVVSSRFLLRHTLTQSDCLES----IIRVVKNLNPCIVVITEFEADHTSPIFMERFSEALSFYTTYFDCLEDCFD 335 ***************************99999999....********************************************** PP GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLv 368 r +++r+ +E+++lg ei+n va+e ++r+ r + e Wr l++ G+ +v+ls++ qa+l+ +++ ++ + + +slv Wk+ p++ Thecc1EG021350t1 336 RCDQTRTILEAAYLGLEIRNTVAAEDEDRIFRDMKIEAWRTCLTNLGLVEVELSSSSLYQANLVATQFApGNTCTCCRNGKSLVVNWKGTPIL 428 *****************************************************************7777788899999******* PP GRAS 369 svSaWr 374 s+S W+ Thecc1EG021350t1 429 SLSTWK 434 ***8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	39.709	35	413	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.3E-81	64	434	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence Send to blast
MFYTSIMASI HGLSAASLIK IARASFNKIA SLEWFDLSVL NKFFNDGCFN LSGDEIKDVE 60 LAILLLASAD KVDSRQFEHA RKFLNLCDFL SSNAGSSIQR VVHYFSKALR EKMDGETGAT 120 TSKAGESRGG ELSHPDETMV SLNPALITCS LKLPFVQVTQ FAGLQAIIEN VASAKKVHFI 180 DLAIRSGAQC TALMQALATR DQCSIELLKV TAVGTTSQTK MKETGKRLAR FAEALNIPFL 240 FNTVMVTDLK DISEDMFELN DDEAVVVSSR FLLRHTLTQS DCLESIIRVV KNLNPCIVVI 300 TEFEADHTSP IFMERFSEAL SFYTTYFDCL EDCFDRCDQT RTILEAAYLG LEIRNTVAAE 360 DEDRIFRDMK IEAWRTCLTN LGLVEVELSS SSLYQANLVA TQFAPGNTCT CCRNGKSLVV 420 NWKGTPILSL STWKLFEQSK PRRNCNVKRK SLGDPAL*

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence Send to blast

MFYTSIMASI HGLSAASLIK IARASFNKIA SLEWFDLSVL NKFFNDGCFN LSGDEIKDVE  60
LAILLLASAD KVDSRQFEHA RKFLNLCDFL SSNAGSSIQR VVHYFSKALR EKMDGETGAT  120
TSKAGESRGG ELSHPDETMV SLNPALITCS LKLPFVQVTQ FAGLQAIIEN VASAKKVHFI  180
DLAIRSGAQC TALMQALATR DQCSIELLKV TAVGTTSQTK MKETGKRLAR FAEALNIPFL  240
FNTVMVTDLK DISEDMFELN DDEAVVVSSR FLLRHTLTQS DCLESIIRVV KNLNPCIVVI  300
TEFEADHTSP IFMERFSEAL SFYTTYFDCL EDCFDRCDQT RTILEAAYLG LEIRNTVAAE  360
DEDRIFRDMK IEAWRTCLTN LGLVEVELSS SSLYQANLVA TQFAPGNTCT CCRNGKSLVV  420
NWKGTPILSL STWKLFEQSK PRRNCNVKRK SLGDPAL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-36	91	434	33	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007035777.2	0.0	PREDICTED: DELLA protein RGL2
TrEMBL	A0A061EPZ6	0.0	A0A061EPZ6_THECC; GRAS family transcription factor, putative
STRING	EOY06703	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM25763	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	3e-53	RGA-like 2

Link Out ? help Back to Top
Phytozome	Thecc1EG021350t1
Entrez Gene	18603634

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]