PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG021351t1

Common Name

TCM_021351

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

GRAS

Protein Properties

Length: 601aa MW: 67410.8 Da PI: 4.8226

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG021351t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	280.6	4.7e-86	229	598	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl....fsevsPi 90 lLl++Ae v ++ +a++lL++ + ++g+p+qR + yf+eAL++++ r ++s +k l+ ++ n +e++++l+ + P+ Thecc1EG021351t1 229 GLLLAAAEKVGYQQYDRASRLLKQCDYMTFKTGNPVQRSVYYFAEALREKIEReTGSASSKGLRRKPLF--NLDEATMSLNPttlaCHGELPF 319 589************************************************5555555666555554..33333333322233678889 PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182 +++++t qaI+e v++++r+HiiD+ i +G+QW L+qaLasR e p l+iT+v+ + k+ +eetg+rL++fA++lg+pf f++++ Thecc1EG021351t1 320 CQITQFTGIQAIVENVAEAKRIHIIDLAIRNGVQWTVLMQALASRYECPLeLLKITAVAT---NAKHLMEETGKRLSSFAQSLGIPFAFKIIM 409 *******************************************96655499***...468999******************** PP GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275 ++++ dl+ + ++++ +Ea+aV ++++ ++l+ + le+ ++++v+ ++P ++v++e ea+hns+ F++rf+e l ++sa fd++++ + Thecc1EG021351t1 410 VSDMLDLKEDLFELDAEEAVAVYSAYAFRSMLATPNRLEN----IMRVVRVINPCLMVISEIEANHNSPIFVNRFIEVLFFFSAYFDCIATCM 498 ****************************88888888....********************************************* PP GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpL 367 ++ ++r +E +++++ i+n+va+eg++r+ rh ++ Wr+ + + G+++v+ls qa+l+ ++++ + +++ + ++l+ gWk+ pL Thecc1EG021351t1 499 KQNYKNREIIESVFFSEGIKNMVAAEGEDRKVRHVNFDVWRAFFVRYGMEEVELSMASLYQADLIRKNFScGSSCTLDMNGKCLLVGWKETPL 591 ******************************************************************9999*************** PP GRAS 368 vsvSaWr 374 s+S+W+ Thecc1EG021351t1 592 HSLSVWK 598 ****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	41.577	201	577	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.6E-83	229	598	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 601 aa Download sequence Send to blast
MADVVFTFDD LNIGGVPDKL RSSDKDFESF EGGGKGKQSS FYGGAYWGET GGIESLSSDY 60 GFYQDDSLEA GFTFSKYRPQ EQQQQQQPFT DYGLLDGVSV NAASPPIQTC LEEIAKLGQI 120 PTGIQDAAEM KKENQHPFSL ASLGLLNNYG SGFKRLNGER RSEGANDITM LTKEEDRKLS 180 TEEIMRVAGE MFIQSSCQTI DSISMLDHPF NLSFSGLSDQ EIKDVELAGL LLAAAEKVGY 240 QQYDRASRLL KQCDYMTFKT GNPVQRSVYY FAEALREKIE RETGSASSKG LRRKPLFNLD 300 EATMSLNPTT LACHGELPFC QITQFTGIQA IVENVAEAKR IHIIDLAIRN GVQWTVLMQA 360 LASRYECPLE LLKITAVATN AKHLMEETGK RLSSFAQSLG IPFAFKIIMV SDMLDLKEDL 420 FELDAEEAVA VYSAYAFRSM LATPNRLENI MRVVRVINPC LMVISEIEAN HNSPIFVNRF 480 IEVLFFFSAY FDCIATCMKQ NYKNREIIES VFFSEGIKNM VAAEGEDRKV RHVNFDVWRA 540 FFVRYGMEEV ELSMASLYQA DLIRKNFSCG SSCTLDMNGK CLLVGWKETP LHSLSVWKFL 600 *

Sequence ? help Back to Top

Protein Sequence Length: 601 aa Download sequence Send to blast

MADVVFTFDD LNIGGVPDKL RSSDKDFESF EGGGKGKQSS FYGGAYWGET GGIESLSSDY  60
GFYQDDSLEA GFTFSKYRPQ EQQQQQQPFT DYGLLDGVSV NAASPPIQTC LEEIAKLGQI  120
PTGIQDAAEM KKENQHPFSL ASLGLLNNYG SGFKRLNGER RSEGANDITM LTKEEDRKLS  180
TEEIMRVAGE MFIQSSCQTI DSISMLDHPF NLSFSGLSDQ EIKDVELAGL LLAAAEKVGY  240
QQYDRASRLL KQCDYMTFKT GNPVQRSVYY FAEALREKIE RETGSASSKG LRRKPLFNLD  300
EATMSLNPTT LACHGELPFC QITQFTGIQA IVENVAEAKR IHIIDLAIRN GVQWTVLMQA  360
LASRYECPLE LLKITAVATN AKHLMEETGK RLSSFAQSLG IPFAFKIIMV SDMLDLKEDL  420
FELDAEEAVA VYSAYAFRSM LATPNRLENI MRVVRVINPC LMVISEIEAN HNSPIFVNRF  480
IEVLFFFSAY FDCIATCMKQ NYKNREIIES VFFSEGIKNM VAAEGEDRKV RHVNFDVWRA  540
FFVRYGMEEV ELSMASLYQA DLIRKNFSCG SSCTLDMNGK CLLVGWKETP LHSLSVWKFL  600
*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	7e-40	261	598	37	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007035778.2	0.0	PREDICTED: DELLA protein RGL1
TrEMBL	A0A061EWU1	0.0	A0A061EWU1_THECC; GRAS family transcription factor, putative
STRING	EOY06704	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15786	10	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	2e-51	RGA-like 2

Link Out ? help Back to Top
Phytozome	Thecc1EG021351t1
Entrez Gene	18603635

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]