PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG021482t2

Common Name

TCM_021482

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

SBP

Protein Properties

Length: 900aa MW: 99980.4 Da PI: 8.4191

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG021482t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	39	2.1e-12	63	92	49	78
EEETTT--SS--S-STTTT-------S--- CS SBP 49 fhelsefDeekrsCrrrLakhnerrrkkqa 78 ++ efDe+krsCrrrLa+hn+rrrk+++ Thecc1EG021482t2 63 VNSVAEFDEGKRSCRRRLAGHNRRRRKTHP 92 56899**********************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	9.904	7	90	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	7.5E-6	62	89	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	8.44E-9	63	95	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	4.84E-8	665	780	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	2.5E-8	668	792	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	4.25E-8	669	780	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 900 aa Download sequence Send to blast
MTMQSVGRRP RLLGLLLAVQ CVKWRTVGLI LAMPRIIIDG IKFVICIRRP VKHWWVLLCS 60 GSVNSVAEFD EGKRSCRRRL AGHNRRRRKT HPDNVATAGS LNDERSSSYL LISLLRILSN 120 MHSNNSDQTK DQDLLSHLLR SLASLGGAID GRNVSGLLQG SQGVVNAARA VGNLEKVTDV 180 VSNGSEHARP SGSASKIDDS ANIPDWQGSM GHCGTLPASN LAQRRSANND VQDGSLSGSP 240 FKMPIPSGGG PPFGANAPEA TVGRIRMNNI DLNNVYDDSQ DYVENLERSL VLKNPVNETL 300 HSSVRVPESH KSSPPQLSAN SDSTSSQSPS TSSGEAQSRT DQIVFKLFGK DPNGFPIALR 360 RQILDWLSHS PTDIESYIRP GCVILTIYLR LRESAWEELC FDLGSSLRRL VDVSNNSFWK 420 TGWLYARVQH SIAFIYNGRV VLDTPLPLKS HKCCRISSIK PIAVSVTERA QFIVKGFNLN 480 RSSTRLLCAI EGKYLVQETC YDLMQVIDPV NEQDELQSLC FLCSIPDVSG RGFIEVEDHG 540 LSSTFFPFIV AEQEVCSEIC TLEGVIETAV PTVDINKNAE KMESKNQALD FIHEMGWLLH 600 RNHLHWRLGR LNPNSNLFPF RRFEWLMEFS MDHEWCAVVK KLLGILFDGT VDLGDHSSIE 660 YALLDMCLLH RAVRRNCRPM VELLLRYVPD KVLDKPGSEQ KPLVDVNYNG FIFKPNVAGP 720 AGLTPLHVAA SKEGSENVLD ALTDDPGLVA VEAWKSARDS TGLTPNDYAC LRGHYSYIHL 780 VQRKINKRSE CGHVVLDISG TRLDCNSKQK LSDGTRVAKA ASLETEKIKM KARHQRCRAC 840 EQKLTYGNSR TSLVYRPAML SMVAIAAVCV CVALLFKSSP EVLYVFRPFR WELLKYGSS*

Sequence ? help Back to Top

Protein Sequence Length: 900 aa Download sequence Send to blast

MTMQSVGRRP RLLGLLLAVQ CVKWRTVGLI LAMPRIIIDG IKFVICIRRP VKHWWVLLCS  60
GSVNSVAEFD EGKRSCRRRL AGHNRRRRKT HPDNVATAGS LNDERSSSYL LISLLRILSN  120
MHSNNSDQTK DQDLLSHLLR SLASLGGAID GRNVSGLLQG SQGVVNAARA VGNLEKVTDV  180
VSNGSEHARP SGSASKIDDS ANIPDWQGSM GHCGTLPASN LAQRRSANND VQDGSLSGSP  240
FKMPIPSGGG PPFGANAPEA TVGRIRMNNI DLNNVYDDSQ DYVENLERSL VLKNPVNETL  300
HSSVRVPESH KSSPPQLSAN SDSTSSQSPS TSSGEAQSRT DQIVFKLFGK DPNGFPIALR  360
RQILDWLSHS PTDIESYIRP GCVILTIYLR LRESAWEELC FDLGSSLRRL VDVSNNSFWK  420
TGWLYARVQH SIAFIYNGRV VLDTPLPLKS HKCCRISSIK PIAVSVTERA QFIVKGFNLN  480
RSSTRLLCAI EGKYLVQETC YDLMQVIDPV NEQDELQSLC FLCSIPDVSG RGFIEVEDHG  540
LSSTFFPFIV AEQEVCSEIC TLEGVIETAV PTVDINKNAE KMESKNQALD FIHEMGWLLH  600
RNHLHWRLGR LNPNSNLFPF RRFEWLMEFS MDHEWCAVVK KLLGILFDGT VDLGDHSSIE  660
YALLDMCLLH RAVRRNCRPM VELLLRYVPD KVLDKPGSEQ KPLVDVNYNG FIFKPNVAGP  720
AGLTPLHVAA SKEGSENVLD ALTDDPGLVA VEAWKSARDS TGLTPNDYAC LRGHYSYIHL  780
VQRKINKRSE CGHVVLDISG TRLDCNSKQK LSDGTRVAKA ASLETEKIKM KARHQRCRAC  840
EQKLTYGNSR TSLVYRPAML SMVAIAAVCV CVALLFKSSP EVLYVFRPFR WELLKYGSS*

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:16095614}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007035971.2	0.0	PREDICTED: squamosa promoter-binding-like protein 12 isoform X2
Swissprot	Q9SMX9	0.0	SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBL	A0A061ER93	0.0	A0A061ER93_THECC; Squamosa promoter-binding protein, putative isoform 2
STRING	EOY06896	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Link Out ? help Back to Top
Phytozome	Thecc1EG021482t2
Entrez Gene	18603759

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]