PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG021618t1

Common Name

TCM_021618

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

GRAS

Protein Properties

Length: 539aa MW: 61003.7 Da PI: 4.5916

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG021618t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	149.2	4e-46	169	534	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 +lL + ea ++++++la+ ++ + e asp g++ +R+a+ + + ++++ ++e+ s + +a+++f++++P+ +f+h Thecc1EG021618t1 169 HLLKAYGEAREKNQTQLAEVIMRCVGEKASPVGETWERIAFSLSQSIQNQSDY---------LMQES----SRNFETAFRAFYQMFPYGRFAH 248 677888899999***************************877776666444.........22233....456778899********* PP GRAS 96 ltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvak 184 ++aN+aIlea+ ++ +++Hi+Dfdi++G+QWp+L++a+a + +lR+T + e++ s + e t+++L + A++lg++++ + + Thecc1EG021618t1 249 FAANSAILEAMPNDaDMLHIVDFDIGEGIQWPPLIEAMAWQ---HKTLRLTSIRWGEEDfahSPWRFEDTRRQLCDHARSLGLKLKVEEM--- 335 *******9998999*****************96...457**998887888999*******************98... PP GRAS 185 rledl..eleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk.......vvvvveqe..adh.nsesFlerflealey 263 +edl el++++ + +E la n+++ l ++ ++++++ +++L++ k+l + ++++ + + a++ + + F + f l + Thecc1EG021618t1 336 GIEDLanELKKMKKRGggREWLAFNCMVGLPHMG--KGKSRKFVNQFLNVAKELLASsvprnrgIITFGDGDacAKLkDCSGFGTFFDGHLMH 426 4555511355555554889**********8..777777889***995432222444999964455667799999999 PP GRAS 264 ysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve... 352 y a+++s++++++++ ++r+ +E ++g++i+ ++ + +e+++ + + e ++ +++s++ ++ak +r+ + + ++v Thecc1EG021618t1 427 YQAILESMQSNFAEHLmQARMAMESLFVGPNICPQAWFQKWKEIEETR---HFQ---AETALEGLRVSTERLMEAKGTVRERE-NLFEVSigg 512 ****999988878***********9998888888444444...444...4566777789***********9.669998666 PP GRAS 353 eesgslvlgWkdrpLvsvSaWr 374 + ++l l W++ +Lv vS+Wr Thecc1EG021618t1 513 NCGNELALEWRGTTLVRVSSWR 534 669999*************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	22.359	141	512	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.4E-43	169	534	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence Send to blast
MMESENFPLL WPVDDFMNPT IDQFELHDLN MSAHFNGCEF SSSFTTREDS SDISSISHFS 60 TMFSGEVFQF PACDDQLQVT VPLEDFSVVP LEGLESMLTD GIEDLYNCLD ETSEESFQSL 120 PLSSHGQDVW SPSPSVRSSE ASTDVTSMQS SLTMPGVAME IDNQLSIFHL LKAYGEAREK 180 NQTQLAEVIM RCVGEKASPV GETWERIAFS LSQSIQNQSD YLMQESSRNF ETAFRAFYQM 240 FPYGRFAHFA ANSAILEAMP NDADMLHIVD FDIGEGIQWP PLIEAMAWQH KTLRLTSIRW 300 GEEDFAHSPW RFEDTRRQLC DHARSLGLKL KVEEMGIEDL ANELKKMKKR GGGREWLAFN 360 CMVGLPHMGK GKSRKFVNQF LNVAKELLAS SVPRNRGIIT FGDGDACAKL KDCSGFGTFF 420 DGHLMHYQAI LESMQSNFAE HLMQARMAME SLFVGPNICP QAWFQKWKEI EETRHFQAET 480 ALEGLRVSTE RLMEAKGTVR ERENLFEVSI GGNCGNELAL EWRGTTLVRV SSWRQDQS*

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence Send to blast

MMESENFPLL WPVDDFMNPT IDQFELHDLN MSAHFNGCEF SSSFTTREDS SDISSISHFS  60
TMFSGEVFQF PACDDQLQVT VPLEDFSVVP LEGLESMLTD GIEDLYNCLD ETSEESFQSL  120
PLSSHGQDVW SPSPSVRSSE ASTDVTSMQS SLTMPGVAME IDNQLSIFHL LKAYGEAREK  180
NQTQLAEVIM RCVGEKASPV GETWERIAFS LSQSIQNQSD YLMQESSRNF ETAFRAFYQM  240
FPYGRFAHFA ANSAILEAMP NDADMLHIVD FDIGEGIQWP PLIEAMAWQH KTLRLTSIRW  300
GEEDFAHSPW RFEDTRRQLC DHARSLGLKL KVEEMGIEDL ANELKKMKKR GGGREWLAFN  360
CMVGLPHMGK GKSRKFVNQF LNVAKELLAS SVPRNRGIIT FGDGDACAKL KDCSGFGTFF  420
DGHLMHYQAI LESMQSNFAE HLMQARMAME SLFVGPNICP QAWFQKWKEI EETRHFQAET  480
ALEGLRVSTE RLMEAKGTVR ERENLFEVSI GGNCGNELAL EWRGTTLVRV SSWRQDQS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-13	185	434	21	269	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007026605.2	0.0	PREDICTED: nodulation-signaling pathway 2 protein
TrEMBL	A0A061ERW2	0.0	A0A061ERW2_THECC; GRAS family transcription factor, putative
STRING	EOY07107	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14344	10	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66770.1	2e-18	GRAS family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG021618t1
Entrez Gene	18597477

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]