PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG021629t1

Common Name

TCM_021629

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bZIP

Protein Properties

Length: 201aa MW: 23249.6 Da PI: 9.6459

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG021629t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	24.4	6.5e-08	105	158	10	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 10 kqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 + NR++A++sR+R+ ++ie+L + +++ +a+ +L+ +++ +k a l++e+ Thecc1EG021629t1 105 LLANRVSAQKSRLRRMEYIEKLNKDIETEQAKIAELAPQVSYYKHRRAMLQKEN 158 567*****************************9999999999999999888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.9E-4	99	160	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.73E-8	102	152	No hit	No description
CDD	cd14703	3.03E-13	103	152	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.4E-8	105	155	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MPPKDQTSPN PEQMISPEGS NPPSSLDIVE LTSSLQATEP RRAISLHKRS ASDSLVILRK 60 PYLVGQSSSS LVTETQKWGR SFEPTMDPKK MKRWTYLHTH TMKLLLANRV SAQKSRLRRM 120 EYIEKLNKDI ETEQAKIAEL APQVSYYKHR RAMLQKENDE IKQKIEFLEK EEARKEAEYQ 180 ALKDERDMLA LTYFLQQEGL *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017976242.1	1e-124	PREDICTED: basic leucine zipper 19
TrEMBL	A0A061EXY5	1e-144	A0A061EXY5_THECC; Uncharacterized protein
STRING	EOY07119	1e-145	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18651	6	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58120.1	1e-17	bZIP family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG021629t1
Entrez Gene	18597486

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]