PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG021641t1

Common Name

TCM_021641

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 172aa MW: 19143.5 Da PI: 9.077

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG021641t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.5	1.4e-09	56	96	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri ++f L++++P +K++ +++L +A++Y+k L Thecc1EG021641t1 56 ARERRHRISDRFKILQSMVPGG-----TKMDTVSMLDEAIHYVKFL 96 699***************87.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.148	47	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-13	52	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.20E-13	53	100	No hit	No description
SMART	SM00353	2.2E-12	53	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.1E-12	53	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.3E-7	56	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MDYFPSPNLC SSSSFAGSPS VANNRNNNNN SKEKKKAGKK TKGAVKLSTD PQSVAARERR 60 HRISDRFKIL QSMVPGGTKM DTVSMLDEAI HYVKFLKTQI WLHQAMINFV DDDPSSFFAG 120 SFPVQGDFYS PNNTNPNPAA ALQPSQLLPL PDSCFQDDQW TMPYDVYMKN Q*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007026627.2	1e-102	PREDICTED: transcription factor bHLH140
Swissprot	Q9M041	2e-33	BH140_ARATH; Transcription factor bHLH140
TrEMBL	A0A061EXZ5	1e-124	A0A061EXZ5_THECC; Transcription factor bHLH140
STRING	EOY07129	1e-125	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15290	14	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01310.1	1e-34	APRATAXIN-like

Link Out ? help Back to Top
Phytozome	Thecc1EG021641t1
Entrez Gene	18597494

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]