PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG021876t1
Common NameTCM_021876
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C2H2
Protein Properties Length: 170aa    MW: 18808 Da    PI: 6.398
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG021876t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23.1e-052850123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y+C+ C+k Fs+   L  H++ H
  Thecc1EG021876t1 28 YTCSFCKKGFSNAQALGGHMNIH 50
                      9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.87E-72554No hitNo description
Gene3DG3DSA:3.30.160.607.6E-62652IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00422850IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.5722855IPR007087Zinc finger, C2H2
PROSITE patternPS0002803050IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
METKHPKVEK SDHIVWSLED LPGQAKSYTC SFCKKGFSNA QALGGHMNIH RKDRAKLRES  60
SEENILPLDM LKTINPPDDH SQVSEIILES SEEKSSSPRR PSKLSREDDG GSASVSPGGK  120
VAIKTSGESE KESLRLIHGW TSQIELDLEL RLGPDPHQDQ TTKSTRECF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN1277700.0JN127770.1 Theobroma cacao clone TCC_BC032C24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007026943.21e-120PREDICTED: transcriptional regulator TAC1
TrEMBLA0A061EQV71e-120A0A061EQV7_THECC; C2H2 and C2HC zinc fingers superfamily protein, putative
STRINGEOY074451e-121(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69912341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.13e-20C2H2 family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]