PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG022001t1
Common NameTCM_022001
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C2H2
Protein Properties Length: 219aa    MW: 24512.6 Da    PI: 10.5158
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG022001t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016137159123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C +Cgk F     L  H+r+H
  Thecc1EG022001t1 137 HECAICGKKFDLGQALGGHMRKH 159
                       78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.1E-1286111IPR007087Zinc finger, C2H2
SuperFamilySSF576671.59E-886159No hitNo description
PROSITE profilePS501579.53687114IPR007087Zinc finger, C2H2
SMARTSM003550.2987109IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.9E-4132160IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.2E-8137161IPR007087Zinc finger, C2H2
PROSITE profilePS501579.827137159IPR007087Zinc finger, C2H2
SMARTSM003550.24137159IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280139159IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MFISLDIAHC LRPFLAAKGG ALFDSLFINS FHFASKPKKS FSRKIRLTFV DMKGGRESEE  60
SVANCLMLLS HGLETKRTLD HSVEDVFECK TCHRRFPSFQ ALGGHRASHK RPRLMGESQK  120
ADGSKFLSLA ITKPKKHECA ICGKKFDLGQ ALGGHMRKHR ASIYESFSPF PVVDPDLPVL  180
SRSNSKRIMR LDLNLTPLEN DLKALFGKMA PKIDNLRL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021289722.11e-142LOW QUALITY PROTEIN: zinc finger protein ZAT11-like
SwissprotQ9SLD41e-41ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A061ESH81e-157A0A061ESH8_THECC; C2H2 and C2HC zinc fingers superfamily protein, putative
STRINGEOY076131e-158(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.14e-39C2H2 family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]