PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG022077t2
Common NameTCM_022077
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family AP2
Protein Properties Length: 479aa    MW: 52788.3 Da    PI: 7.5776
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG022077t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56e-17158207155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Thecc1EG022077t2 158 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 207
                       78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.54E-16158216IPR016177DNA-binding domain
PfamPF008475.5E-9158207IPR001471AP2/ERF domain
CDDcd000188.39E-11159217No hitNo description
SMARTSM003802.0E-32159221IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-17159215IPR001471AP2/ERF domain
PROSITE profilePS5103217.794159215IPR001471AP2/ERF domain
CDDcd000181.56E-12250295No hitNo description
SuperFamilySSF541712.09E-6250294IPR016177DNA-binding domain
SMARTSM003805.7E-13251299IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MMLDLNLSVI SGGDDSVEMA GEALPDFSGY NNKQMENSGS FDSSIVNADT TTTTGDDDSS  60
SNAAAADTFA YSFGILKTTE KRENNQRTIP LFPVNVQGGG GKSTGSSQKE WLDLGKSREA  120
SEQHCGAAEQ RIAAQQQQQV QLKQQVKKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG  180
KQVYLGGFDT AHAAARAYDR AAIKFRGVDA DINFNVNDYE EDVKQMSNFT KEEFVHILRR  240
QSTGFSRGSS KYRGVTLHKC GRWEARMGQF LGKKAYDKAA IKCNGREAVT NFEPSTYEGE  300
LISESDNGDR NQGLDLNLGI APPYTSDPQK ENNNSDNFAI QRGWDGLPVE TGARIDNSAP  360
ATMRVQPSLG QAMAFKHLQN WNGANPSFFP VYRERAIEKR MEVDYAPNWA WQIQGLYGGA  420
NPVPLFPTAA SSGFSSSTIT SPSAAAGQLC IPNTTFLHRH HFPPAITNPN ISHFYCQS*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6210202e-36JX621020.1 Gossypium hirsutum clone NBRI_GE67425 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007027221.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X3
SwissprotQ9SK031e-105RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A061ESW70.0A0A061ESW7_THECC; AP2.7 isoform 2
STRINGEOY077220.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.15e-93related to AP2.7
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]